Repository logo
Home
Research Outputs
Collections
Statistics
Shared Repository Homepage
  1. Home
  2. Cultural Heritage Shared Repository Service
  3. Royal Botanic Gardens, Kew
  4. Article
  5. Achieving higher standards in species distribution modeling by leveraging the diversity of available software.

Achieving higher standards in species distribution modeling by leveraging the diversity of available software.

Thumbnail Image
Download
Name

Ecography_-_2024_-_Kass_-_Achieving_higher_standards_in_species_distribution_modeling_by_leveraging_the_diversity_of.pdf

Description
visibility:open
Size

1.84 MB

Format

Adobe PDF

Checksum (CRC64NVME)

fwD5Kd8zliI=

Resource type
Journal article
Creator (person)
Kass, Jamie M.
ORCIDORCID logo
Smith, Adam B.
ORCIDORCID logo
Warren, Dan L.
ORCIDORCID logo
Vignali, Sergio
ORCIDORCID logo
Schmitt, Sylvain
ORCIDORCID logo
more
Date published
November 19, 2024
Abstract

The increasing online availability of biodiversity data and advances in ecological modeling have led to a proliferation of open‐source modeling tools. In particular, R packages for species distribution modeling continue to multiply without guidance on how they can be employed together, resulting in high fidelity of researchers to one or several packages. Here, we assess the wide variety of software for species distribution models (SDMs) and highlight how packages can work together to diversify and expand analyses in each step of a modeling workflow. We also introduce the new R package ‘sdmverse' to catalog metadata for packages, cluster them based on their methodological functions, and visualize their relationships. To demonstrate how pluralism of software use helps improve SDM workflows, we provide three extensive and fully documented analyses that utilize tools for modeling and visualization from multiple packages, then score these tutorials according to recent methodological standards. We end by identifying gaps in the capabilities of current tools and highlighting outstanding challenges in the development of software for SDMs.

Organisational unit
Science
Funder
Funder nameISNIAwards
Japan Society for the Promotion of Science, Japan
ISNIISNI logo
Postdoctoral Fellowships for Foreign Researchers Program - Grants-In-Aid for Scientific Research (KAKENHI) (20F20774)
Alan Graham Fund in Global Change
National Science Foundation, United States
ISNIISNI logo
DBI 1661510 - BoCP 2225078
National Aeronautics and Space Administration, United States
ISNIISNI logo
80NSSC18K0406. E - 80NSSC22K0883
Azrieli Foundation, Canada
ISNIISNI logo
International Postdoctoral Fellowship, in association with the Belmaker Lab – Marine Ecology and Biodiversity
Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica, Mexico
Project IA202824
Consejo Nacional de Humanidades, Ciencias y Tecnologías, Mexico
ISNIISNI logo
Ciencia de Frontera CF-2023-I-115
HORIZON EUROPE Marie Sklodowska-Curie Actions, European Union
Grant agreement no. 891702
Villum Fonden, Denmark
ISNIISNI logo
Research grant no. 25925
Deutsche Forschungsgemeinschaft, Germany
ISNIISNI logo
Grant no. ZU 361/6-1
Journal title
Ecography
Article number
e07346
Publisher
Published by John Wiley & Sons Ltd on behalf of Nordic Society Oikos
Place of publication
UK
ISSN
0906-7590
eISSN
1600-0587
Date accepted
October 4, 2024
Official URL
https://doi.org/10.1111/ecog.07346
Rights statement
In Copyright
Licence
CC BY 3.0
DOI
10.1111/ecog.07346
Alternate identifier
e07346
Keywords
Reproducibility
Programming
Code
R package
Niche
Habitat
Additional information
IF = 5.9 (2023-2024)
Managed by the British Library and supported by the AHRC

Built with DSpace-CRIS software - Extension maintained and optimized by 4Science

  • Cookie settings
  • End User Agreement
  • About
  • Contact
  • Help
Repository logo COAR Notify