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Journal article
Extensive plastid-nuclear discordance in a recent radiation of Nicotiana section Suaveolentes (Solanaceae)
Nicotiana section Suaveolentes is the largest section of Nicotiana and is a monophyletic group of allotetraploid species. Most of the species are endemic to Australia, but three species occur on islands in the South Pacific as far east as French Polynesia and one species is native to Namibia. Here, we... -
Journal article
Savanna tree evolutionary ages inform the reconstruction of the paleoenvironment of our hominin ancestors.
Ideas on hominin evolution have long invoked the emergence from forests into open habitats as generating selection for traits such as bipedalism and dietary shifts. Though controversial, the savanna hypothesis continues to motivate research into the palaeo-environments of Africa. Reconstruction of these ancient environments has depended heavily on carbon isotopic... -
Journal article
Geographic barriers and Pleistocene climate change shaped patterns of genetic variation in the Eastern Afromontane biodiversity hotspot.
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Journal article
Phylogenetic placement of Cailliella praerupticola (Melastomataceae), a rare, monospecific lineage from Guinea, West Africa.
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Journal article
Phylogenomics of Brosimum (Moraceae) and allied genera, including a revised subgeneric system.
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Master's dissertation
Phylogenetics and phylogeography of blue Entoloma.
Elsey, Jacob
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Journal article
Justicieae II: Resolved Placement of Many Genera and Recognition of a New Lineage Sister to Isoglossinae.
We present phylogenetic results for Justicieae, the largest of the major lineages of Acanthaceae. With 300% more sequence data and a similarly increased but also more geographically representative taxon sample compared to the only previous study of the lineage as a whole, we confirm the existence of the Pseuderanthemum Lineage,...McDade, Lucinda A. ; Kiel, Carrie A. ; Daniel, Thomas F. ; Darbyshire, Iain
Lineages, Phylogenetics, Sequence data, Justicieae, Acanthaceae, Pollen morphology, Asia, and Madagascar
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Journal article
Evolutionary history of CAM photosynthesis in Neotropical Clusia : insights from genomics, anatomy, physiology and climate.
Clusia is a remarkable genus of Neotropical woody plants as its members engage in either C3 photosynthesis or employ, to varying degrees, crassulacean acid metabolism (CAM) photosynthesis. Information about the evolutionary history of CAM in Clusia is scarce. Restriction site-associated sequencing of 64 species (20% of the genus) provided strong... -
Journal article
Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data.
We present the first comparative plastome study of Pleurothallidinae with analyses of structural and molecular characteristics and identification of the ten most-variable regions to be incorporated in future phylogenetic studies. We sequenced complete plastomes of eight species in the subtribe and compared phylogenetic results of these to parallel analyses of... -
Journal article
Advances and perspectives on the evolutionary history and diversification of Neotropical Myrteae (Myrtaceae).
Myrtaceae are one of the largest families of flowering plants and are widely distributed in the Neotropics, where they are mainly represented by the tribe Myrteae. Myrteae are the most species-rich tribe of Myrtaceae and include groups with significant ecological and economic importance. Myrteae are considered to be a model...Phylogenetics, Species diversity, Evolutionary trends, Systematics, Neotropics, and South America
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Journal article
“Manisa bozaka” or “Counting grass”: Global Grassy Group guide to understanding and measuring the functional and taxonomic composition of ground layer plants.
Grassy biomes span more than 40% of the global land surface and are central to people, biodiversity and Earth System functioning. There is however limited standardised measurement of herbaceous taxonomic and functional composition in grassy biomes that inhibits the development of a comparative understanding of grassy biomes among geographic regions.... -
Journal article
Pollinator shifts as triggers of speciation in painted petal irises (Lapeirousia: Iridaceae).
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Journal article
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons.
Wild progenitors of crops are important resources for breeding and for understanding domestication, but identifying them is difficult. Using an integrative approach, we discovered that a Sudanese form of melon with nonbitter whitish pulp, known as the Kordofan melon, is the closest relative of domesticated watermelons and a possible progenitor.... -
Journal article
A First Complete Phylogenomic Hypothesis for Diploid Blueberries (Vaccinium section Cyanococcus).
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Research report
Kew Tree of Life Explorer - Release notes 2.0.
Release notes for the Tree of Life Explorer data release 2.0Royal Botanic Gardens, Kew
Phylogenetics, Tree of Life, Plant and Fungal Tree of Life Project, and Evolution
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Journal article
Tribe Shoreae (Dipterocarpaceae subfamily Dipterocarpoideae) Finally Dissected.
The dipterocarp tribe Shoreae, perhaps more than any other members of this elegant family of often giant emergent trees, is familiar to all who visit the once ubiquitous lowland forests of tropical Asia. Timbers of the genus comprised the bulk of hardwood traded on international markets for thirty years, since...Ashton, P. S. ; Heckenhauer, J.
Conservation, Phylogenetics, Shorea, Nomenclature, Taxonomy, and Asia
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Journal article
Diversification dynamics in the Neotropics through time, clades, and biogeographic regions.
The origins and evolution of the outstanding Neotropical biodiversity are a matter of intense debate. A comprehensive understanding is hindered by the lack of deep-time comparative data across wide phylogenetic and ecological contexts. Here, we quantify the prevailing diversification trajectories and drivers of Neotropical diversification in a sample of 150... -
Journal article
Utilizing a phylogenetic plant classification for systematic arrangements in botanic gardens and herbaria.
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Journal article
The origin of modern patterns of continental diversity in Mauritiinae palms: the Neotropical museum and the Afrotropical graveyard.
While the latitudinal diversity gradient has received much attention, biodiversity and species richness also vary between continents across similar latitudes. Fossil information can be used to understand the evolutionary mechanisms that generated such variation between continents of similar latitudes. We integrated fossil data into a phylogenetic analysis of the Mauritiinae... -
Journal article
Palynology of Amicia Kunth. (Leguminosae – Papilionoideae – Dalbergieae – Informal Adesmia clade) set in a systematic and phylogenetic context.
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Book
Early Events in Monocot Evolution.
Tracing the evolution of one of the most ancient major branches of flowering plants, this is a wide-ranging survey of state-of-the-art research on the early clades of the monocot phylogenetic tree. It explores a series of broad but linked themes, providing for the first time a detailed and coherent view...Royal Botanic Gardens, Kew
Monocotyledoneae, Evolution (Biology), Evolutionary genetics, Angiospermae, Taxonomy, and Phylogenetics
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Journal article
Landscape dynamics and diversification of the megadiverse South American freshwater fish fauna.
Landscape dynamics are widely thought to govern the tempo and mode of continental radiations, yet the effects of river network rearrangements on dispersal and lineage diversification remain poorly understood. We integrated an unprecedented occurrence dataset of 4,967 species with a newly compiled, time-calibrated phylogeny of South American freshwater fishes—the most... -
Journal article
Precipitation is the main axis of tropical plant phylogenetic turnover across space and time.
Early natural historians—Comte de Buffon, von Humboldt, and De Candolle—established environment and geography as two principal axes determining the distribution of groups of organisms, laying the foundations for biogeography over the subsequent 200 years, yet the relative importance of these two axes remains unresolved. Leveraging phylogenomic and global species distribution... -
Journal article
Barking up the wrong tree: the dangers of taxonomic misidentification in molecular phylogenetic studies.
– is a Brazilian endemic genus that has sat uncomfortably in Convolvulaceae where it was placed due to an enlarged and adnate fruit bract typical of . A recent molecular phylogeny suggested that two of its five morphologically almost identical species actually belong to two different families, Malpighiaceae (superrosids) and... -
Book chapter
Phylogenetics and conservation.
Forest, F.
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Journal article
DNA‐based fungal diversity in Madagascar and arrival of the ectomycorrhizal fungi to the island.