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Journal article
Evolutionary history, traits, and weediness in Digitaria (Poaceae: Panicoideae).
Digitaria is a large pantropical genus, which includes a number of economically problematic agricultural weeds. Difficulties in species identification and the circumscription of the genus have previously hindered progress in understanding its evolution and developing a stable classification. We investigate the evolutionary history of Digitaria by combining two approaches: (i)... -
Journal article
Genomic, spatial and morphometric data for discrimination of four species in the Mediterranean Tamus clade of yams (Dioscorea, Dioscoreaceae).
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Journal article
Phylogenomics and generic limits of Dypsidinae (Arecaceae), the largest palm radiation in Madagascar.
Eiserhardt, Wolf L. ; Bellot, Sidonie ; Cowan, Robyn S. ; Dransfield, John ; Hansen, Lars Emil S.F. …
Target sequence capture, Madagascar, Hyb-Seq, Dypsis, Phylogeny, Chrysalidocarpus, and Palmae
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Journal article
Phylogenetic Relationships Within the Hyper-Diverse Genus Eugenia (Myrtaceae: Myrteae) Based on Target Enrichment Sequencing.
is one of the most taxonomically challenging lineages of flowering plants, in which morphological delimitation has changed over the last few years resulting from recent phylogenetic study based on molecular data. Efforts, until now, have been limited to Sanger sequencing of mostly plastid markers. These phylogenetic studies indicate 11 clades...Giaretta, Augusto ; Murphy, Bruce ; Maurin, Olivier ; Mazine, Fiorella F. ; Sano, Paulo …
Target sequence capture, Myrtaceae, Eugenia, Phylogenomics, Hyb-Seq, and High-throughput sequencing
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Journal article
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
The reduced cost of high‐throughput sequencing and the development of gene sets with wide phylogenetic applicability has led to the rise of sequence capture methods as a plausible platform for both phylogenomics and population genomics in plants. An important consideration in large targeted sequencing projects is the per‐sample cost, which... -
Journal article
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the cost of developing targeted sequencing approaches is associated with the generation of preliminary data needed for the identification of orthologous loci for probe design.... -
Journal article
Hyb-Seq for Flowering Plant Systematics
High-throughput DNA sequencing (HTS) presents great opportunities for plant systematics, yet genomic complexity needs to be reduced for HTS to be effectively applied. We highlight Hyb-Seq as a promising approach, especially in light of the recent development of probes enriching 353 low-copy nuclear genes from any flowering plant taxon.