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2022
Journal article
A new sectional classification of Lachenalia (Asparagaceae) based on a multilocus phylogeny.
(Asparagaceae; Scilloideae; Hyacintheae) is a large and morphologically diverse genus of more than 140 bulbous species endemic to southern Africa. Previous attempts to infer a well‐resolved and robustly supported phylogeny of using Sanger sequencing of candidate loci and/or morphological characters have been largely unsuccessful. Consequently, the current infrageneric classification is...Duncan, Graham D. ; Schlichting, Carl D. ; Forest, Félix ; Ellis, Allan G. ; Lemmon, Alan R. …
High-throughput sequencing, Molecular systematics, Southern Africa, and Lachenalia
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2022
Journal article
Systematics and conservation of British and Irish orchids: a "state of the union" assessment to accompany Atlas 2020.
Prompted by concurrent completion of the latest plant atlas for Britain and Ireland, the orchid flora of these islands is reviewed in detail, focusing on 21st century progress in both systematics research and formal conservation categorisation under IUCN criteria. DNA-based phylogenies consistently circumscribe monophyletic groups that constitute obvious genera, though... -
2022
Journal article
The numbers of fungi: contributions from traditional taxonomic studies and challenges of metabarcoding.
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2021
Journal article
Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis.
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2021
Journal article
Extraction and high-throughput sequencing of oak heartwood DNA: Assessing the feasibility of genome-wide DNA methylation profiling.
Tree ring features are affected by environmental factors and therefore are the basis for dendrochronological studies to reconstruct past environmental conditions. Oak wood often provides the data for these studies because of the durability of oak heartwood and hence the availability of samples spanning long time periods of the distant...Rossi, Federico ; Crnjar, Alessandro ; Comitani, Federico ; Feliciano, Rodrigo ; Jahn, Leonie …
High-throughput sequencing, DNA methylation profiling, Heartwood, Extraction, Oak, and Quercus
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2022
Journal article
A new sectional classification of Lachenalia (Asparagaceae) based on a multilocus phylogeny.
Duncan, Graham D. ; Schlichting, Carl D. ; Forest, Félix ; Ellis, Allan G. ; Lemmon, Alan R. …
Molecular systematics, Classification, Southern Africa, Lachenalia, and High-throughput sequencing
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2022
Journal article
Phylogenetic Relationships Within the Hyper-Diverse Genus Eugenia (Myrtaceae: Myrteae) Based on Target Enrichment Sequencing.
is one of the most taxonomically challenging lineages of flowering plants, in which morphological delimitation has changed over the last few years resulting from recent phylogenetic study based on molecular data. Efforts, until now, have been limited to Sanger sequencing of mostly plastid markers. These phylogenetic studies indicate 11 clades...Giaretta, Augusto ; Murphy, Bruce ; Maurin, Olivier ; Mazine, Fiorella F. ; Sano, Paulo …
Target sequence capture, Myrtaceae, Eugenia, Phylogenomics, Hyb-Seq, and High-throughput sequencing
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2022
Journal article
Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses.