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2018
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2023
Journal article
Ancient DNA genomics and the renaissance of herbaria.
Herbaria are undergoing a renaissance as valuable sources of genomic data for exploring plant evolution, ecology, and diversity. Ancient DNA retrieved from herbarium specimens can provide unprecedented glimpses into past plant communities, their interactions with biotic and abiotic factors, and the genetic changes that have occurred over time. Here, we...Burbano, Hernán A. ; Gutaker, Rafal M.
Genomic data, Herbaria, Ancient DNA, Herbarium genomics, Herbarium specimens, Plant communities, Plant ecology, DNA, Plant evolution, and Genomics
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2020
Journal article
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.
Gramene (http://www.gramene.org), a knowledgebase founded on comparative functional analyses of genomic and pathway data for model plants and major crops, supports agricultural researchers worldwide. The resource is committed to open access and reproducible science based on the FAIR data principles. Since the last NAR update, we made nine releases; doubled...Tello-Ruiz, Marcela K ; Naithani, Sushma ; Gupta, Parul ; Olson, Andrew ; Wei, Sharon …
Major crops, Genomics, Model plants, Comparative genomics, Gramene, and Databases
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2021
Journal article
Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data.
We present the first comparative plastome study of Pleurothallidinae with analyses of structural and molecular characteristics and identification of the ten most-variable regions to be incorporated in future phylogenetic studies. We sequenced complete plastomes of eight species in the subtribe and compared phylogenetic results of these to parallel analyses of...