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2022
Journal article
Asteraceae as a model system for evolutionary studies: from fossils to genomes.
With c. 24 700 species (10% of all flowering plants), Asteraceae are one of the largest and most phenotypically diverse angiosperm families, with considerable economic and ecological importance. Asteraceae are distributed worldwide, from nearly polar latitudes all the way to the tropics, and occur across a diverse range of habitats...Palazzesi, Luis ; Pellicer, Jaume ; Barreda, Viviana D ; Loeuille, Benoît ; Mandel, Jennifer R …
Phylogenomics, Fossil record, Biogeography, Asteraceae, Evolution, Compositae, and Genome size
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2021
Journal article
Resolving generic limits in Cyperaceae tribe Abildgaardieae using targeted sequencing
Morphological characterizations of genera in Cyperaceae tribe Abildgaardieae have been highly problematic and the subject of much debate. Earlier molecular phylogenetic studies based on Sanger sequencing and a limited sampling have indicated that several generic circumscriptions are not monophyletic. Here, we provide the first phylogenetic hypothesis for Abildgaardieae using targeted...Larridon, Isabel ; Zuntini, Alexandre R. ; Barrett, Russell L. ; Wilson, Karen L. ; Bruhl, Jeremy J. …
Fimbristylis, C4 photosynthesis, generic circumscription, Bulbostylis, and Angiosperms353
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2020
Journal article
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
The reduced cost of high‐throughput sequencing and the development of gene sets with wide phylogenetic applicability has led to the rise of sequence capture methods as a plausible platform for both phylogenomics and population genomics in plants. An important consideration in large targeted sequencing projects is the per‐sample cost, which... -
2020
Journal article
Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics
Shee, Zhi Qiang ; Frodin, David G. ; Cámara-Leret, Rodrigo ; Pokorny, Lisa
Schefflera, Sequence capture, Historical biogeography, Araliaceae, Target enrichment, Papuasia, New Guinea, and Herbariomics
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2018
Journal article
A roadmap for global synthesis of the plant tree of life
Providing science and society with an integrated, up‐to‐date, high quality, open, reproducible and sustainable plant tree of life would be a huge service that is now coming within reach. However, synthesizing the growing body of DNA sequence data in the public domain and disseminating the trees to a diverse audience... -
2018
Journal article
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the cost of developing targeted sequencing approaches is associated with the generation of preliminary data needed for the identification of orthologous loci for probe design....