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2021
Journal article
Phylogenomic analysis points to a South American origin of Manihot and illuminates the primary gene pool of cassava.
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2021
Journal article
Extraction and high-throughput sequencing of oak heartwood DNA: Assessing the feasibility of genome-wide DNA methylation profiling.
Tree ring features are affected by environmental factors and therefore are the basis for dendrochronological studies to reconstruct past environmental conditions. Oak wood often provides the data for these studies because of the durability of oak heartwood and hence the availability of samples spanning long time periods of the distant...Rossi, Federico ; Crnjar, Alessandro ; Comitani, Federico ; Feliciano, Rodrigo ; Jahn, Leonie …
High-throughput sequencing, DNA methylation profiling, Heartwood, Extraction, Oak, and Quercus
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2020
Journal article
A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project
High-throughput DNA sequencing techniques enable time- and cost-effective sequencing of large portions of the genome. Instead of sequencing and annotating whole genomes, many phylogenetic studies focus sequencing effort on large sets of pre-selected loci, which further reduces costs and bioinformatic challenges while increasing coverage. One common approach that enriches loci...Andermann, Tobias ; Torres Jiménez, Maria Fernanda ; Matos-Maraví, Pável ; Batista, Romina ; Blanco-Pastor, José L. …