Index Catalog // Royal Botanic Gardens, Kew research repository

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Filtering by: Creator Dodsworth, Steven Creator Forest, Félix Availability External link (access may be restricted) Keyword phylogenomics Collection Plant and Fungal Tree of Life project

2018

Journal article

A roadmap for global synthesis of the plant tree of life

Providing science and society with an integrated, up‐to‐date, high quality, open, reproducible and sustainable plant tree of life would be a huge service that is now coming within reach. However, synthesizing the growing body of DNA sequence data in the public domain and disseminating the trees to a diverse audience...

Eiserhardt, Wolf L. ; Antonelli, Alexandre ; Bennett, Dominic J. ; Botigué, Laura R. ; Burleigh, J. Gordon …
GenBank, pteridophytes, megaphylogenies, phyloinformatics, cyberinfrastructure, bryophytes, angiosperms, land plant phylogeny, sampling, and phylogenomics
2018

Journal article

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering

Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the cost of developing targeted sequencing approaches is associated with the generation of preliminary data needed for the identification of orthologous loci for probe design....

Johnson, Matthew G. ; Pokorny, Lisa ; Dodsworth, Steven ; Botigué, Laura R. ; Cowan, Robyn S. …
sequence capture, nuclear genes, phylogenomics, angiosperms, machine learning, k-means clustering, target enrichment, Hyb-Seq, and k-medoids clustering