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Journal article
Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest
Aim Understanding the complex interaction and relative contributions of factors involved in species and trait diversification is crucial to gain insights into the evolution of Neotropical biodiversity. Here, we investigated the drivers of morphological variation in bromeliads along a latitudinal gradient in a biodiversity hotspot. Location Atlantic Forest, Brazil. Taxon...Neves, Beatriz ; Zanella, Camila M. ; Kessous, Igor M. ; Uribbe, Fernando P. ; Salgueiro, Fabiano …
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Journal article
A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project
High-throughput DNA sequencing techniques enable time- and cost-effective sequencing of large portions of the genome. Instead of sequencing and annotating whole genomes, many phylogenetic studies focus sequencing effort on large sets of pre-selected loci, which further reduces costs and bioinformatic challenges while increasing coverage. One common approach that enriches loci...Andermann, Tobias ; Torres Jiménez, Maria Fernanda ; Matos-Maraví, Pável ; Batista, Romina ; Blanco-Pastor, José L. …
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Journal article
Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae)
Palms are conspicuous floristic elements across the tropics. In continental Africa, even though there are less than 70 documented species, they are omnipresent across the tropical landscape. The genus Raphia has 20 accepted species in Africa and one species endemic to the Neotropics. It is the most economically important genus...Helmstetter, Andrew J. ; Kamga, Suzanne Mogue ; Bethune, Kevin ; Lautenschläger, Thea ; Zizka, Alexander …
Rain forests, Africa, Madagascar, Sequence capture, Exons, Phylogenomics, and Raphia
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Book chapter
Diversity, Endemism, and Evolutionary History of Montane Biotas Outside the Andean Region
Mountain ranges are important centers of biodiversity around the world. This high diversity is the result of the presence of different soil types and underlying bedrock, a variety of micro-climatic regimes, high topographic heterogeneity, a heterogeneous and complex vegetation cline, and a dynamic geo-climatic history. Neotropical research on mountains has... -
Book chapter
On the Young Savannas in the Land of Ancient Forests
Covering ancient geomorphological landscapes, and surrounded by some of the most diverse forests on Earth, the Neotropical savannas were once perceived by naturalists as ancient environments. However, current evidence suggests that tropical forests have existed in the Neotropics since the Paleocene, whereas most plant lineages present in South American savannas... -
Journal article
Selective extinction against redundant species buffers functional diversity
The extinction of species can destabilize ecological processes. A way to assess the ecological consequences of species loss is by examining changes in functional diversity. The preservation of functional diversity depends on the range of ecological roles performed by species, or functional richness, and the number of species per role,...Pimiento, Catalina ; Bacon, Christine D. ; Silvestro, Daniele ; Hendy, Austin ; Jaramillo, Carlos …
global change, molluscs, competition, Caribbean, extinction, and invertebrates
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Journal article
Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
The interchange between the previously disconnected faunas of North and South America was a massive experiment in biological invasion. A major gap in our understanding of this invasion is why there was a drastic increase in the proportion of mammals of North American origin found in South America. Four nonmutually... -
Journal article
Fossil data support a pre-Cretaceous origin of flowering plants
Flowering plants (angiosperms) are the most diverse of all land plants, becoming abundant in the Cretaceous and achieving dominance in the Cenozoic. However, the exact timing of their origin remains a controversial topic, with molecular clocks generally placing their origin much further back in time than the oldest unequivocal fossils....Silvestro, Daniele ; Bacon, Christine D. ; Ding, Wenna ; Zhang, Qiuyue ; Donoghue, Philip C. J. …
Evolution, Computational biology and bioinformatics , and Plant sciences
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Journal article
Genomic and niche divergence in an Amazonian palm complex.
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Journal article
A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics.
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Journal article
Phylogenomics of the Palm Tribe Lepidocaryeae (Calamoideae: Arecaceae) and Description of a New Species of Mauritiella.
Torres Jiménez, Maria Fernanda ; Prata, Eduardo M. B. ; Zizka, Alexander ; Cohn-Haft, Mario ; de Oliveira, Ayslaner V. G. …
Amazonia, Phylogenomics, Palmae, Mauritiella, and Africa
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Journal article
The seasonally dry tropical forest species Cavanillesia chicamochae has a middle Quaternary origin.
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Journal article
Certification of açaí agroforestry increases the conservation potential of the Amazonian tree flora.
The harvesting of açaí berries (palm fruits from the genus ) in Amazonia has increased over the last 20 years due to a high local and global market demand and triggered by their widely acclaimed health benefits as a ‘superfood’. Although such increase represents a financial boom for local communities,...Damasco, Gabriel ; Anhalt, Mandy ; Perdiz, Ricardo O. ; Wittmann, Florian ; de Assis, Rafael L. …
Açaí management, Amazonia, Biodiversity conservation, Euterpe, and Flooded forests
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Journal article
Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses.
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Journal article
Spatio‐temporal evolution of the catuaba clade in the Neotropics: Morphological shifts correlate with habitat transitions.
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Journal article
Limited decadal growth of mountain birch saplings has minor impact on surrounding tundra vegetation.