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Journal article
Clusia salicifolia (Clusiaceae), a new hemiepiphyte species from Costa Rica and Panama.
We describe and illustrate (Clusiaceae) a new species from Central America. This new species is different to all related species for its hemiepiphytic habit, narrow leaves with acute to acuminate apex, reticulate resin canals, staminate flowers with quadrangular androecium with 30 – 47 free stamens, and pistillate flowers with 4...Wodcke, Emma A. ; Luján, Manuel ; Hammel, Barry
Costa Rica, Clusia salicifolia, Neotropics, Herbarium, Taxonomy, Endangered species, Central America, Trees, and Panama
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Journal article
The genome sequence of subterranean clover, Trifolium subterraneum L. (Fabaceae).
We present a genome assembly from an individual (subterranean clover; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 483.8 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 309.28 kilobases and 144.76 kilobases in length, respectively. -
Journal article
The genome sequence of rosebay willowherb Chamaenerion angustifolium (L.) Scop., 1771 (syn. Epilobium angustifolium L., 1753) (Onagraceae).
We present a genome assembly from an individual (fireweed; Tracheophyta; Magnoliopsida; Myrtales; Onagraceae). The genome sequence is 655.9 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 495.18 kilobases and 160.41 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Leitch, Andrew R. ; Leitch, Ilia J. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom …
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Journal article
The genome sequence of weasel’s snout, Misopates orontium (L.) Raf. (Plantaginaceae).
We present a genome assembly from an individual (weasel’s snout; Tracheophyta; Magnoliopsida; Lamiales; Plantaginaceae). The genome sequence is 361.0 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The assembled mitochondrial and plastid genomes have lengths of 569.76 kilobases and 152.15 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom ; Plant Genome Sizing Collective ; Darwin Tree of Life Barcoding Collective …
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Journal article
The genome sequence of spotted medick, Medicago arabica (L.) Huds. (Fabaceae).
We present a genome assembly from an individual (the spotted medick; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 515.5 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 324.47 kilobases and 125.07 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Fay, Michael F. ; Leitch, Ilia J. ; Royal Botanic Gardens Kew Genome Acquisition Lab, United Kingdom ; Plant Genome Sizing Collective …
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Journal article
Living jewels: iterative evolution of iridescent blue leaves from helicoidal cell walls.
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Journal article
Enhancing C and N turnover, functional bacteria abundance, and the efficiency of biowaste conversion using Streptomyces-Bacillus inoculation.
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Journal article
Olearia dibrachiata (Compositae: Astereae: Hinterhuberinae): a taxonomic note. Contributions to the Flora of Mount Jaya, XXII.
S.Moore var. J.Kost. is considered conspecific with D.J.N.Hind & R.J.Johns following a re-examination of both Koster’s protologue diagnosis and its type (and paratype) material.Hind, D. J. Nicholas
Olearia exilis var. subacuta, Mount Jaya (Indonesia), Asteraceae, Indonesia, Compositae, Olearia dibrachiata, Synonymy, and Taxonomy
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Journal article
Phylogenetic trends in TZ staining analysis of six deep dormancy seeds.
The assessment of seed quality and physiological potential is essential in seed production and crop breeding. In the process of rapid detection of seed viability using tetrazolium (TZ) staining, it is necessary to spend a lot of labour and material resources to explore the pretreatment and staining methods of hard...Peng, Chen Yin ; Wu, Yu ; Huang, Wen Hui ; Deng, Zhi Yun ; Sun, Xiao Rui …
Fat content, Endospermic seeds, Hard seed, Exalbuminous seeds, Physical dormancy, and Phylogenetic relationship
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Journal article
Notes on Galtonia (Hyacinthaceae) and a Description of the New Hybrid Galtonia ×ceredigionis.
The history and typification of the five species belonging in the genus Galtonia Decne. (Hyacinthaceae) are discussed. Lectotypes are designated for the names Hyacinthus candicans Baker and Ornithogalum saundersiae Baker. The new spontaneous hybrid Galtonia ×ceredigionis J. Compton & Schrire, formed from a natural cross between G. candicans (Baker) Decne....Compton, James A. ; Schrire, Brian D.
Identification key, Typification, Galtonia, Ornithogalum, Hyacinthus, and Hybrid
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Journal article
Land‐use intensity and relatedness to native plants promote exotic plant invasion in a tropical biodiversity hotspot.
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Journal article
The genome sequence of strawberry clover, Trifolium fragiferum L. (Fabaceae).
We present a genome assembly from an individual (strawberry clover; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 512.0 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 298.57 kilobases and 139.15 kilobases in length, respectively.Mian, Sahr ; Christenhusz, Maarten J. M. ; Leitch, Ilia J. ; Leitch, Andrew R. ; Fay, Michael F. …
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Journal article
The genome sequence of black poplar, Populus nigra subsp. betulifolia L., 1753 (Salicaceae).
We present a genome assembly from an individual subsp. (black poplar; Tracheophyta; Malpighiales; Salicaceae). The genome sequence is 413.2 megabases in span. Most of the assembly (99.73%) is scaffolded into 19 chromosomal pseudomolecules. Mitochondrial and plastid genomes were also assembled. Three mitochondrial assemblies have lengths of 281.85, 335.57 and 186.15... -
Journal article
The genome sequence of lesser trefoil or Irish shamrock, Trifolium dubium Sibth. (Fabaceae).
We present a genome assembly from an individual (lesser trefoil; Tracheophyta; Magnoliopsida; Fabales; Fabaceae) as part of a collaboration between the Darwin Tree of Life and the European Reference Genome Atlas. The genome sequence is 679.1 megabases in span. Most of the assembly is scaffolded into 15 chromosomal pseudomolecules. The...Ruhsam, Markus ; Hollingsworth, Peter M ; Mc Cartney, Ann M. ; Herron, Katie E. ; Hughes, Graham M. …
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Journal article
An expanded circumscription of Trichocentrum (Orchidaceae: Oncidiinae) to include Grandiphyllum and Saundersia.
The genus Trichocentrum is again expanded, this time to include Grandiphyllum and Saundersia, and the respective combinations are made.Meneguzzo, Tniago E. C. ; Chase, Mark W.
Taxonomy, Orchid taxonomy, Brazilian orchids, Neotropical orchids, Trichocentrum, Cymbidieae, Orchidaceae, Orchids, Saundersia, and Grandiphyllum
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Journal article
A glimpse into the diversity of Colombian Acanthaceae.
A short visit to four Colombian herbaria in 2022 is highlighted as an example of modern-day herbarium plant hunting which resulted in the discovery of 14 new species: J.R.I.Wood, J.R.I.Wood & Hoyos-Gómez, J.R.I.Wood, J.R.I.Wood, J.R.I.Wood & Hoyos-Gómez, J.R.I.Wood & Hoyos-Gómez, J.R.I.Wood, J.R.I.Wood & Hoyos-Gómez, J.R.I.Wood, J.R.I.Wood, J.R.I.Wood, J.R.I.Wood & Hoyos-Gómez...Wood, John R. I. ; Hoyos-Gómez, Saúl E. ; Granados Zarate, David E.
Hotspots, Colombia, Aphelandra, New species, Herbaria, Ruellia, Justicia, Plant hunting, Acanthaceae, and Rheophytes
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Journal article
Nitrogen-fixing and non-nitrogen-fixing legume plants differ in leaf nutrient concentrations and relationships between photosynthetic and hydraulic traits.
Legumes account for a significant proportion of plants in the terrestrial ecosystems. Nitrogen-fixing capability of certain legumes is a pivotal trait that contributes to their ecological dominance. Yet, the functional traits and trait relationships between N-fixer and non-N-fixer legumes are poorly understood. Here, we investigated 27 functional traits associated with... -
Journal article
Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets.
Effective population size ( ) is a pivotal evolutionary parameter with crucial implications in conservation practice and policy. Genetic methods to estimate have been preferred over demographic methods because they rely on genetic data rather than time‐consuming ecological monitoring. Methods based on linkage disequilibrium (LD), in particular, have become popular... -
Journal article
Phylogenomics and the rise of the angiosperms
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods1,2. A robust understanding of angiosperm evolution is required to explain their rise to ecological dominance. So far, the angiosperm tree of life has been determined primarily by means of analyses of the plastid genome3,4. Many studies have drawn on...Zuntini, Alexandre R. ; Carruthers, Tom ; Maurin, Olivier ; Bailey, Paul C. ; Leempoel, Kevin …
Plant evolution, Angiosperms, Phylogenetics, Speciation, and Phylogenomics
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Journal article
Nine new species of Australian Nicotiana (Solanaceae).
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Journal article
Reinstating Dyfrolomyces and introducing Melomastia pyriformis sp. nov. (Pleurotremataceae, Dyfrolomycetales) from Guangdong Province, China.
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Journal article
The complete mitochondrial genome of Trigonisca nataliae (Hymenoptera, Apidae) assemblage reveals heteroplasmy in the control region.
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Journal article
Checklist of Orchidaceae from Caquetá, Colombia.
A checklist of Orchidaceae from Caquetá, Colombia is presented here. We recorded 98 genera and 418 species, exceeding a previous inventory by 276 species. The checklist is conservative in the number of genera and species by including only taxa that were fully and reliably identified and that are either linked... -
Journal article
The forgotten giant of the Pacific: a review on giant taro (Alocasia macrorrhizos (L.) G.Don).
This article provides an overview over taxonomy, distribution, cultivation and use of giant taro, (L.) G.Don. The species belongs to the Araceae (aroid) family, which consists of 3700 species grouped into 107 genera. Among those species are several important crop species from tropical Asia and America. Giant taro, with a...Müller, Jonas V. ; Guzzon, Filippo
Araceae, Pacific Region, Alocasia macrorrhizos, Gene bank, Plant genetic resources, Neglected crop, Conservation, Aroids, and Breeding
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Journal article
Taxonomy and lectotypification of Lepidagathis hamiltoniana (Acanthaceae: Barlerieae), an endemic species of India.
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Journal article
Repeated evolution of pollination syndromes in a highly diverse bromeliad lineage is correlated with shifts in life form and habitat.
Mutualistic plant-pollinator interactions play a critical role in the diversification of flowering plants. The spatiotemporal correlates of such interactions can be understood in a phylogenetic context. Here, we generate ddRAD-seq data for the highly diverse Vriesea-Stigmatodon lineage to test for correlated trait evolution among pollination syndromes and life form, habitat... -
Journal article
Taxonomic notes on Thrixspermum (Orchidaceae: Aeridinae), with five new species from Thailand.
Five new species of Thrixspermum (Orchidaceae) are described from Thailand, two from sect. Dendrocolla: T. alboluteum (South-West floristic region), T. praetermissum (East); and three from sect. Thrixspermum: T. simile (South-East), T. flammeum (East), T. polystictum (East). Descriptions, illustrations, notes on distribution, ecology, phenology, conservation status, and morphological comparisons with allied...Toolmal, Nopparut ; Suddee, Somran ; Culham, Alastair ; Utteridge, Timothy ; Schuiteman, André
Taxonomy, Aeridinae, Thailand, Section Thrixspermum, Thrixspermum, New species, and Section Dendrocolla
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Journal article
Revision of Indigofera section Oligophyllae (Fabaceae: Indigofereae) from South Africa.
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Journal article
Rediscovery of the lost skink Proscelotes aenea and implications for conservation.
Biodiversity loss is recognized as a grand challenge of the twenty-first century but ascertaining when a species is “lost” can be incredibly difficult—since the absence of evidence is not evidence of absence. This may be a relatively easy task for large and conspicuous animals, but extremely difficult for those living...Puruleia, Ali ; Nanvonamuquitxo, Cristóvão ; Ernesto, Milagre ; Jamal, Abdurabe ; Amade, Iassine …
Skinks, Proscelotes aenea, Lumbo (Mozambique), Mozambique, and Threatened species
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Journal article
Comparative analysis of repeat content in plant genomes, large and small.
The DNA Features pipeline is the analysis pipeline at EMBL-EBI that annotates repeat elements, including transposable elements. With Ensembl’s goal to stay at the cutting edge of genome annotation, we proved that this pipeline needed an update. We then created a new analysis that allowed the Ensembl database to store...Argentin, Joris ; Bolser, Dan ; Kersey, Paul J. ; Flicek, Paul
Genomics, Transposons, Plants, Annotation, Comparative analysis, and Pipeline
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Journal article
Indigenous crop diversity maintained despite the introduction of major global crops in an African centre of agrobiodiversity.
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Journal article
Disrupting iron homeostasis can potentiate colistin activity and overcome colistin resistance mechanisms in Gram-Negative Bacteria.
is a Gram-negative priority pathogen that can readily overcome antibiotic treatment through a range of intrinsic and acquired resistance mechanisms. Treatment of carbapenem-resistant largely relies on the use of colistin in cases where other treatment options have been exhausted. However, the emergence of resistance against this last-line drug has significantly...