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Search Results
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Journal article
A roadmap for global synthesis of the plant tree of life
Providing science and society with an integrated, up‐to‐date, high quality, open, reproducible and sustainable plant tree of life would be a huge service that is now coming within reach. However, synthesizing the growing body of DNA sequence data in the public domain and disseminating the trees to a diverse audience... -
Journal article
Linking democracy and biodiversity conservation: Empirical evidence and research gaps
Increasing human pressure threatens plant and animal species with extinction worldwide. National political institutions constitute an important arena for biodiversity conservation. Yet, the relationship between how democratic these national institutions are and a country’s efforts towards and track-record for biodiversity conservation remains poorly understood. In this review, we outline the...Rydén, Oskar ; Zizka, Alexander ; Jagers, Sverker ; Lindberg, Staffan ; Antonelli, Alexandre
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Journal article
Species limits in butterflies (Lepidoptera: Nymphalidae): reconciling classical taxonomy with the multispecies coalescent
Species delimitation is at the core of biological sciences. During the last decade, molecular‐based approaches have advanced the field by providing additional sources of evidence to classical, morphology‐based taxonomy. However, taxonomy has not yet fully embraced molecular species delimitation beyond threshold‐based, single‐gene approaches, and taxonomic knowledge is not commonly integrated...Matos‐Maraví, Pável ; Wahlberg, Niklas ; Antonelli, Alexandre ; Penz, Carla M.
Insect Science and Ecology, Evolution, Behavior and Systematics
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Journal article
Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest
Aim Understanding the complex interaction and relative contributions of factors involved in species and trait diversification is crucial to gain insights into the evolution of Neotropical biodiversity. Here, we investigated the drivers of morphological variation in bromeliads along a latitudinal gradient in a biodiversity hotspot. Location Atlantic Forest, Brazil. Taxon...Neves, Beatriz ; Zanella, Camila M. ; Kessous, Igor M. ; Uribbe, Fernando P. ; Salgueiro, Fabiano …
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Journal article
Human activity is altering the world’s zoogeographical regions
Zoogeographical regions, or zooregions, are areas of the Earth defined by species pools that reflect ecological, historical and evolutionary processes acting over millions of years. Consequently, researchers have assumed that zooregions are robust and unlikely to change on a human timescale. However, the increasing number of human-mediated introductions and extinctions...Bernardo-Madrid, Rubén ; Calatayud, Joaquín ; González-Suárez, Manuela ; Rosvall, Martin ; Lucas, Pablo …
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Journal article
Unlocking the properties of plants and fungi for sustainable development
Humans have been using biodiversity for hundreds of thousands of years, but at no time in our history has it been more crucial to accelerate our exploration of the useful properties of the species that inhabit the world around us.Antonelli, Alexandre ; Smith, Rhian J. ; Simmonds, Monique S. J.
fungi, properties, sustainable development, biodiversity, SDGs, and plants
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Journal article
The effects of climate change on the distribution of South American antbirds (Thamnophilus punctatus complex) as affected by niche divergences and contact zone interactions between species
Several studies have shown that climatic change has been accelerating due to human activities, leading to dramatic effects on biodiversity. Modeling studies describe how species have reacted in the past to climatic change, and this information can help us to understand the degree of biotic susceptibility to current and future...da Silva, Erasmo Andrade ; de Araujo, Helder Farias Pereira ; Aleixo, Alexandre ; Antonelli, Alexandre ; Fernandes, Alexandre
South America, Birds, Climate change, and Niche conservatism
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Journal article
Building mountain biodiversity: Geological and evolutionary processes
Mountain regions are unusually biodiverse, with rich aggregations of small-ranged species that form centers of endemism. Mountains play an array of roles for Earth’s biodiversity and affect neighboring lowlands through biotic interchange, changes in regional climate, and nutrient runoff. The high biodiversity of certain mountains reflects the interplay of multiple...Rahbek, Carsten ; Borregaard, Michael ; Antonelli, Alexandre ; Colwell, Robert ; Holt, Ben …
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Journal article
Why mountains matter for biodiversity
Mountains are arguably Earth's most striking features. They play a major role in determining global and regional climates, are the source of most rivers, act as cradles, barriers and bridges for species, and are crucial for the survival and sustainability of many human societies. The complexity of mountains is tightly...Perrigo, Allison ; Hoorn, Carina ; Antonelli, Alexandre
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Journal article
Ancient polyploidy and genome evolution in palms
Mechanisms of genome evolution are fundamental to our understanding of adaptation and the generation and maintenance of biodiversity, yet genome dynamics are still poorly characterized in many clades. Strong correlations between variation in genomic attributes and species diversity across the plant tree of life suggest that polyploidy or other mechanisms...Barrett, Craig ; McKain, Michael ; Sinn, Brandon ; Ge, Xue-Jun ; Zhang, Yuqu …
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Journal article
The Impact of Mutualisms on Species Richness
Mutualisms – cooperative interactions among different species – are known to influence global biodiversity. Nevertheless, theoretical and empirical work has led to divergent hypotheses about how mutualisms modulate diversity. We ask here when and how mutualisms influence species richness. Our synthesis suggests that mutualisms can promote or restrict species richness...Chomicki, Guillaume ; Weber, Marjorie ; Antonelli, Alexandre ; Bascompte, Jordi ; Kiers, Toby
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Journal article
The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia
Most knowledge on biodiversity derives from the study of charismatic macro-organisms, such as birds and trees. However, the diversity of micro-organisms constitutes the majority of all life forms on Earth. Here, we ask if the patterns of richness inferred for macro-organisms are similar for micro-organisms. For this, we barcoded samples...Ritter, Camila D. ; Faurby, Søren ; Bennett, Dominic J. ; Naka, Luciano N. ; ter Steege, Hans …
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Journal article
A novel phylogenetic infrageneric classification of Baccharis (Asteraceae: Astereae), a highly diversified American genus
We present the hitherto most comprehensive phylogenetic hypothesis for Baccharis. Our results confirm that subtribe Baccharidinae is a monogeneric group and support a broad circumscription of Baccharis as monophyletic with the inclusion of all genera that have been previously segregated from it (Baccharidastrum, Baccharidiopsis, Heterothalamulopsis, Heterothalamus, Lanugothamnus). We provide comprehensive...Heiden, Gustavo ; Antonelli, Alexandre ; Pirani, José Rubens
Plant Science and Ecology, Evolution, Behavior and Systematics
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Journal article
Advanced understanding of phylogenetic relationships, morphological evolution and biogeographic history of the mega-diverse plant genus Myrcia and its relatives (Myrtaceae: Myrteae)
Myrcia is the largest exclusively Neotropical genus of the plant family Myrtaceae with c. 770 species. Although several studies have elucidated the relationships within particular sections of the genus, to date no phylogeny has been produced that includes a broad taxonomic and geographic representation. Here we present a phylogenetic hypothesis...Amorim, Bruno ; Vasconcelos, Thais ; Souza, Gustavo ; Alves, Marccus ; Antonelli, Alexandre …
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Journal article
Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae
Premise: Information on orthologous groups of genes, their sequence variability, and annotation is required for project design in phylogenetic reconstruction. This resource is unavailable for the flowering plant family Acanthaceae (>4000 species). Methods: We compared transcriptome sequences spanning the extant diversity of Acanthaceae in order to provide a set of...Morais, Erica ; Schönenberger, Jürg ; Conti, Elena ; Antonelli, Alexandre ; Szövényi, Péter
transcriptomes, Lamiales, nuclear markers, Acanthaceae, and phylogeny
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Journal article
Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies
Massively parallel DNA sequencing opens up opportunities for bridging multiple temporal and spatial dimensions in biodiversity research, thanks to its efficiency to recover millions of nucleotide polymorphisms. Here, we identify the current status, discuss the main challenges, and look into future perspectives on biodiversity genomics focusing on insects, which arguably...Matos-Maraví, Pável ; Duarte Ritter, Camila ; Barnes, Christopher ; Nielsen, Martin ; Olsson, Urban …
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Journal article
Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae)
Palms are conspicuous floristic elements across the tropics. In continental Africa, even though there are less than 70 documented species, they are omnipresent across the tropical landscape. The genus Raphia has 20 accepted species in Africa and one species endemic to the Neotropics. It is the most economically important genus...Helmstetter, Andrew J. ; Kamga, Suzanne Mogue ; Bethune, Kevin ; Lautenschläger, Thea ; Zizka, Alexander …
Rain forests, Africa, Madagascar, Sequence capture, Exons, Phylogenomics, and Raphia
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Journal article
The Global Museum: natural history collections and the future of evolutionary science and public education
Natural history museums are unique spaces for interdisciplinary research and educational innovation. Through extensive exhibits and public programming and by hosting rich communities of amateurs, students, and researchers at all stages of their careers, they can provide a place-based window to focus on integration of science and discovery, as well... -
Journal article
sampbias, a method for quantifying geographic sampling biases in species distribution data
Geo‐referenced species occurrences from public databases have become essential to biodiversity research and conservation. However, geographical biases are widely recognized as a factor limiting the usefulness of such data for understanding species diversity and distribution. In particular, differences in sampling intensity across a landscape due to differences in human accessibility...Zizka, Alexander ; Antonelli, Alexandre ; Silvestro, Daniele
collection effort, Global Biodiversity Information Facility (GBIF), roadside bias, presence only data, and sampling intensity
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Journal article
raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML
raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used softwares for phylogenetic inference using maximum likelihood. Here we present raxmlGUI 2.0, a complete rewrite of the GUI which seamlessly integrates RAxML binaries for all major operating systems with an intuitive graphical front‐end to...Edler, Daniel ; Klein, Johannes ; Antonelli, Alexandre ; Silvestro, Daniele
phylogenetics, evolutionary biology, software, bioinformatics, and molecular biology
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Journal article
Extinction risk and threats to plants and fungi
Societal Impact Statement There is increasing awareness that plants and fungi, as natural solutions, can play an important role in tackling ongoing global environmental challenges. We illustrate how understanding current and projected threats to plants and fungi is necessary to manage and mitigate risks, while building awareness of gaps and... -
Journal article
International collaboration between collections‐based institutes for halting biodiversity loss and unlocking the useful properties of plants and fungi
Societal Impact Statement The United Nations' Sustainable Development Goal (SDG) 17 calls for “strong global partnerships and cooperation” to support the other SDGs. The collections‐based science community offers many examples of conservation of plant and fungal biodiversity, sharing, repatriation and aggregation of data, access to new technologies, supply of plant... -
Journal article
Phylogenomics and biogeography of the world's thrushes (Aves, Turdus): new evidence for a more parsimonious evolutionary history
To elucidate the relationships and spatial range evolution across the world of the bird genus Turdus (Aves), we produced a large genomic dataset comprising ca 2 million nucleotides for ca 100 samples representing 53 species, including over 2000 loci. We estimated time-calibrated maximum-likelihood and multispecies coalescent phylogenies and carried out...Batista, Romina ; Olsson, Urban ; Andermann, Tobias ; Aleixo, Alexandre ; Ribas, Camila Cherem …
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Journal article
Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Fungi are a key component of tropical biodiversity. However, due to their inconspicuous and largely subterranean nature, they are usually neglected in biodiversity inventories. The goal of this study was to identify the key determinants of fungal richness, community composition, and turnover in tropical rainforests. We tested specifically for the... -
Journal article
A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project
High-throughput DNA sequencing techniques enable time- and cost-effective sequencing of large portions of the genome. Instead of sequencing and annotating whole genomes, many phylogenetic studies focus sequencing effort on large sets of pre-selected loci, which further reduces costs and bioinformatic challenges while increasing coverage. One common approach that enriches loci...Andermann, Tobias ; Torres Jiménez, Maria Fernanda ; Matos-Maraví, Pável ; Batista, Romina ; Blanco-Pastor, José L. …
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Journal article
Phylogenomics and biogeography of the world's thrushes (Aves, Turdus): new evidence for a more parsimonious evolutionary history
To elucidate the relationships and spatial range evolution across the world of the bird genus Turdus (Aves), we produced a large genomic dataset comprising ca 2 million nucleotides for ca 100 samples representing 53 species, including over 2000 loci. We estimated time-calibrated maximum-likelihood and multispecies coalescent phylogenies and carried out...Batista, Romina ; Olsson, Urban ; Andermann, Tobias ; Aleixo, Alexandre ; Ribas, Camila Cherem …
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Journal article
iucn_sim: a new program to simulate future extinctions based on IUCN threat status
The ongoing environmental crisis poses an urgent need to forecast the who, where and when of future species extinctions, as such information is crucial for targeting conservation efforts. Commonly, such forecasts are made based on conservation status assessments produced by the International Union for Conservation of Nature (IUCN). However, when...Andermann, Tobias ; Faurby, Søren ; Cooke, Robert ; Silvestro, Daniele ; Antonelli, Alexandre
generation length, extinction, MCMC, Bayesian , Aves , and IUCN
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Journal article
WEGE: A new metric for ranking locations for biodiversity conservation
Aim Effective policymaking for biological conservation requires the identification and ranking of the most important areas for protection or management. One of the most frequently used systems for selecting priority areas is the Key Biodiversity Areas (hereafter KBAs), developed by the International Union for Conservation of Nature (IUCN). However, KBAs...Farooq, Harith ; Azevedo, Josué ; Belluardo, Francesco ; Nanvonamuquitxo, Cristóvão ; Bennett, Dominic …
conservation, policymaking, WEGE, Key Biodiversity Area, prioritization, KBAs, and EDGE
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Journal article
Brain expansion in early hominins predicts carnivore extinctions in East Africa
While the anthropogenic impact on ecosystems today is evident, it remains unclear if the detrimental effect of hominins on co‐occurring biodiversity is a recent phenomenon or has also been the pattern for earlier hominin species. We test this using the East African carnivore fossil record. We analyse the diversity of...Faurby, Søren ; Silvestro, Daniele ; Werdelin, Lars ; Antonelli, Alexandre
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Journal article
outsider: Install and run programs, outside of R, inside of R
In many areas of research, product development and software engineering, analytical pipelines – workflows connecting output from multiple software – are key for processing and running tests on data. They can provide results in a consistent, modular and transparent manner. Pipelines also make it easier to demonstrate the reproducibility of...Bennett, Dominic ; Hettling, Hannes ; Silvestro, Daniele ; Vos, Rutger ; Antonelli, Alexandre
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Journal article
Endemism patterns are scale dependent
Areas of endemism are important in biogeography because they capture facets of biodiversity not represented elsewhere. However, the scales at which they are relevant to research and conservation are poorly analysed. Here, we calculate weighted endemism (WE) and phylogenetic endemism (PE) separately for all birds and amphibians across the globe....Daru, Barnabas H. ; Farooq, Harith ; Antonelli, Alexandre ; Faurby, Søren
biogeography, evolutionary ecology, and conservation biology
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Journal article
Toward Unifying Global Hotspots of Wild and Domesticated Biodiversity
Global biodiversity hotspots are areas containing high levels of species richness, endemism and threat. Similarly, regions of agriculturally relevant diversity have been identified where many domesticated plants and animals originated, and co-occurred with their wild ancestors and relatives. The agro-biodiversity in these regions has, likewise, often been considered threatened. Biodiversity... -
Journal article
Pollinators drive floral evolution in an Atlantic Forest genus
Pollinators are important drivers of angiosperm diversification at both micro and macroevolutionary scales. Both hummingbirds and bats pollinate the species-rich and morphologically diverse genus Vriesea across its distribution in the Brazilian Atlantic Forest. Here, we (1) determine if floral traits predict functional groups of pollinators as documented, confirming the pollination... -
Journal article
Taxonomic revision of the genus Xenopholis Peters, 1869 (Serpentes: Dipsadidae): Integrating morphology with ecological niche.
Gomes, Daniel Faustino ; Azevedo, Josué ; Murta-Fonseca, Roberta ; Faurby, Søren ; Antonelli, Alexandre …
Ecological niches, Spine , Skull , Dentition, Forests , Teeth , Taxonomy, and Brazil
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Editorial
Protecting and sustainably using the world’s plants and fungi
This special issue – Protecting and sustainably using the world’s plants and fungi – features the research that underpins Kew’s State of the World’s Plants and Fungi 2020 report. This special issue, and the associated report, are global efforts representing work from 210 authors, in 97 institutions, across 42 countries...Antonelli, Alexandre ; Hiscock, Simon ; Lennon, Sarah ; Simmonds, Monique ; Smith, Rhian J. …
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Journal article
Conservation Policy: Helping or hindering science to unlock properties of plants and fungi.
Societal Impact Statement Biodiversity loss is happening at an unprecedented rate. Understanding and protecting biodiversity has never been more urgent, and scientific research is key to this. Fair and transparent access and benefit sharing policies enable research to take place, whilst supporting sustainable livelihoods of communities and ensuring benefits are... -
Journal article
Plant and fungal collections: Current status, future perspectives.
Societal Impact Statement Plant and fungal specimens provide the auditable evidence that a particular organism occurred at a particular place, and at a particular point in time, verifying past occurrence and distribution. They also document the aspects of human exploration and culture. Collectively specimens form a global asset with significant... -
Book chapter
On the Young Savannas in the Land of Ancient Forests
Covering ancient geomorphological landscapes, and surrounded by some of the most diverse forests on Earth, the Neotropical savannas were once perceived by naturalists as ancient environments. However, current evidence suggests that tropical forests have existed in the Neotropics since the Paleocene, whereas most plant lineages present in South American savannas... -
Book chapter
Diversity, Endemism, and Evolutionary History of Montane Biotas Outside the Andean Region
Mountain ranges are important centers of biodiversity around the world. This high diversity is the result of the presence of different soil types and underlying bedrock, a variety of micro-climatic regimes, high topographic heterogeneity, a heterogeneous and complex vegetation cline, and a dynamic geo-climatic history. Neotropical research on mountains has... -
Research report
Exploring the Impact of Political Regimes on Biodiversity
National governments are the main actors responsible for mapping and protecting their biodiversity, but countries differ in their capacity, willingness, and effectiveness to do so. We quantify the global biodiversity managed by different regime types and developed a tool to explore the links between level of democracy and other key...Zizka, Alexander ; Rydén, Oskar ; Edler, Daniel ; Klein, Johannes ; Aronsson, Heléne …
Democracy, Regime type, Autocracy, Specimen collection, and Biodiversity
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Journal article
Trade‐off between seed dispersal in space and time.
Seed movement and delayed germination have long been thought to represent alternative risk‐spreading strategies, but current evidence covers limited scales and yields mixed results. Here we present the first global‐scale test of a negative correlation between dispersal and dormancy. The result demonstrates a strong and consistent pattern that species with...Chen, Si‐Chong ; Poschlod, Peter ; Antonelli, Alexandre ; Liu, Udayangani ; Dickie, John B.
Annual , Longevity, Lifespan, Seed dispersal, Seed bank, Dormancy, Germination, Perennial, and Iteroparity
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Journal article
No one-size-fits-all solution to clean GBIF.
Species occurrence records provide the basis for many biodiversity studies. They derive from georeferenced specimens deposited in natural history collections and visual observations, such as those obtained through various mobile applications. Given the rapid increase in availability of such data, the control of quality and accuracy constitutes a particular concern.... -
Journal article
Unlocking plant resources to support food security and promote sustainable agriculture.
Societal Impact Statement Biodiversity is essential to food security and nutrition locally and globally. By reviewing the global state of edible plants and highlighting key neglected and underutilized species (NUS), we attempt to unlock plant food resources and explore the role of fungi, which along with the wealth of traditional... -
Journal article
Plant Power: Opportunities and challenges for meeting sustainable energy needs from the plant and fungal kingdoms
Societal Impact Statement Bioenergy is a major component of the global transition to renewable energy technologies. The plant and fungal kingdoms offer great potential but remain mostly untapped. Their increased use could contribute to the renewable energy transition and addressing the United Nations Sustainable Development Goal 7 “Ensure access to...Grace, Olwen M. ; Lovett, Jon C. ; Gore, Charles J. N. ; Moat, Justin ; Ondo, Ian …
biofuel, sustainable energy, feedstock , Bioenergy , energy poverty, research effort , renewables, and biogas
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Journal article
Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
The interchange between the previously disconnected faunas of North and South America was a massive experiment in biological invasion. A major gap in our understanding of this invasion is why there was a drastic increase in the proportion of mammals of North American origin found in South America. Four nonmutually... -
Journal article
The rise of angiosperms pushed conifers to decline during global cooling
Competition among species and entire clades can impact species diversification and extinction, which can shape macroevolutionary patterns. The fossil record shows successive biotic turnovers such that a dominant group is replaced by another. One striking example involves the decline of gymnosperms and the rapid diversification and ecological dominance of angiosperms...Condamine, Fabien L. ; Silvestro, Daniele ; Koppelhus, Eva B. ; Antonelli, Alexandre
macroevolution, competition, paleoenvironment, and gymnosperms
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Journal article
The past and future human impact on mammalian diversity
To understand the current biodiversity crisis, it is crucial to determine how humans have affected biodiversity in the past. However, the extent of human involvement in species extinctions from the Late Pleistocene onward remains contentious. Here, we apply Bayesian models to the fossil record to estimate how mammalian extinction rates...Andermann, Tobias ; Faurby, Søren ; Turvey, Samuel T. ; Antonelli, Alexandre ; Silvestro, Daniele
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Journal article
Selective extinction against redundant species buffers functional diversity
The extinction of species can destabilize ecological processes. A way to assess the ecological consequences of species loss is by examining changes in functional diversity. The preservation of functional diversity depends on the range of ecological roles performed by species, or functional richness, and the number of species per role,...Pimiento, Catalina ; Bacon, Christine D. ; Silvestro, Daniele ; Hendy, Austin ; Jaramillo, Carlos …
global change, molluscs, competition, Caribbean, extinction, and invertebrates
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Journal article
Botanical Monography in the Anthropocene
Botanical monographs have been the gold standard for communicating comprehensive systematic information about plants for over 300 years. Monographs catalyse species discovery, biodiversity documentation and conservation, and facilitate downstream research on wild and cultivated plant species. Increased availability of DNA sequence data and digitised resources now provide powerful resources for...Grace, Olwen M. ; Pérez-Escobar, Oscar A. ; Lucas, Eve J. ; Vorontsova, Maria S. ; Lewis, Gwilym P. …
conservation, Tree of Life, taxonomy , plants systematics , and biodiversity
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Journal article
Widespread homogenization of plant communities in the Anthropocene.
Native biodiversity decline and non-native species spread are major features of the Anthropocene. Both processes can drive biotic homogenization by reducing trait and phylogenetic differences in species assemblages between regions, thus diminishing the regional distinctiveness of biotas and likely have negative impacts on key ecosystem functions. However, a global assessment... -
Journal article
Contrasting patterns of phylogenetic turnover in amphibians and reptiles are driven by environment and geography in Neotropical savannahs.
Azevedo, Josué A. R. ; Nogueira, Cristiano de C. ; Antonelli, Alexandre ; Faurby, Søren
Beta diversity, Cerrado, Generalized dissimilarity modelling, Regionalization, Connectivity, and Herptofauna
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Journal article
Above‐ and below‐ground biodiversity responses to the prolonged flood pulse in central‐western Amazonia, Brazil.
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Journal article
The rise and fall of Neotropical biodiversity.
Antonelli, Alexandre
Conservation, Evolution, and Extinction
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Journal article
Genomic and niche divergence in an Amazonian palm complex.
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Journal article
Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding.
Duarte Ritter, Camila ; Forster, Dominik ; Azevedo, Josué A. R. ; Antonelli, Alexandre ; Nilsson, R. Henrik …
Fungi, Bacterias, Biodiversity, Protists, Metabarcoding, and Tropics
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Journal article
Ten golden rules for reforestation to optimize carbon sequestration, biodiversity recovery and livelihood benefits
Urgent solutions to global climate change are needed. Ambitious tree‐planting initiatives, many already underway, aim to sequester enormous quantities of carbon to partly compensate for anthropogenic CO2 emissions, which are a major cause of rising global temperatures. However, tree planting that is poorly planned and executed could actually increase CO2... -
Journal article
Touch me carefully: a step towards understanding morphological diversity in the South American spiny sunflowers Compositae, Barnadesioideae).
de Lima Ferreira, Paola ; Antonelli, Alexandre ; Groppo, Milton
Distribution, Neotropical flora, Eudicots, Morphology, Asteraceae, Taxonomy, and South America
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Journal article
A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics.
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Journal article
Above‐ and below‐ground biodiversity responses to the prolonged flood pulse in central‐western Amazonia, Brazil.
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Journal article
Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections.
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Journal article
Settling a family feud: A high-level phylogenomic framework for the gentianales based on 353 nuclear genes and partial plastomes.
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Journal article
Phylogenomics of the Palm Tribe Lepidocaryeae (Calamoideae: Arecaceae) and Description of a New Species of Mauritiella.
Torres Jiménez, Maria Fernanda ; Prata, Eduardo M. B. ; Zizka, Alexander ; Cohn-Haft, Mario ; de Oliveira, Ayslaner V. G. …
Amazonia, Phylogenomics, Palmae, Mauritiella, and Africa
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Journal article
Loss of functional diversity through anthropogenic extinctions of island birds is not offset by biotic invasions.
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Journal article
The seasonally dry tropical forest species Cavanillesia chicamochae has a middle Quaternary origin.
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Journal article
Fossil data support a pre-Cretaceous origin of flowering plants
Flowering plants (angiosperms) are the most diverse of all land plants, becoming abundant in the Cretaceous and achieving dominance in the Cenozoic. However, the exact timing of their origin remains a controversial topic, with molecular clocks generally placing their origin much further back in time than the oldest unequivocal fossils....Silvestro, Daniele ; Bacon, Christine D. ; Ding, Wenna ; Zhang, Qiuyue ; Donoghue, Philip C. J. …
Evolution, Computational biology and bioinformatics , and Plant sciences
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Journal article
Bio-Dem, a tool to explore the relationship between biodiversity data availability and socio-political conditions in time and space.
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Journal article
Good news for habitat restoration projects: Eucalyptus does not inhibit the germination of Polylepis.
Meneses, Lidia ; Martinez, Yvonne Y. ; Antonelli, Alexandre ; Gareca, Edgar E.
Eucalyptus, Habitat restoration, Kewiña, Allelopathy, Reforestation, Polylepis, Exotic species, and Conservation
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Magazine article
Turn your garden into a biodiversity haven.
Antonelli, Alexandre
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Journal article
Revised Species Delimitation in the Giant Water Lily Genus Victoria (Nymphaeaceae) Confirms a New Species and Has Implications for Its Conservation.
Reliably documenting plant diversity is necessary to protect and sustainably benefit from it. At the heart of this documentation lie species concepts and the practical methods used to delimit taxa. Here, we apply a total-evidence, iterative methodology to delimit and document species in the South American genus (Nymphaeaceae). The systematics... -
Journal article
The origin of modern patterns of continental diversity in Mauritiinae palms: the Neotropical museum and the Afrotropical graveyard.
While the latitudinal diversity gradient has received much attention, biodiversity and species richness also vary between continents across similar latitudes. Fossil information can be used to understand the evolutionary mechanisms that generated such variation between continents of similar latitudes. We integrated fossil data into a phylogenetic analysis of the Mauritiinae... -
Book chapter
Foreword.
Antonelli, Alexandre
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Journal article
Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses.
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Journal article
The counteracting effects of anthropogenic speciation and extinction on mammal species richness and phylogenetic diversity.
Faurby, Søren ; Pedersen, Rasmus Østergaard ; Svenning, Jens‐Christian ; Antonelli, Alexandre
Extinction, Speciation, Mammals, Phylogenetic diversity, Anthropogenic, and Species diversity
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Journal article
Global variation in diversification rate and species richness are unlinked in plants.
Species richness varies immensely around the world. Variation in the rate of diversification (speciation minus extinction) is often hypothesized to explain this pattern, while alternative explanations invoke time or ecological carrying capacities as drivers. Focusing on seed plants, the world’s most important engineers of terrestrial ecosystems, we investigated the role...Tietje, Melanie ; Antonelli, Alexandre ; Baker, William J. ; Govaerts, Rafaël ; Smith, Stephen A. …
Diversification, Biogeography, Biodiversity, Macroecology, and Plant diversity drivers
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Journal article
Global patterns in endemicity and vulnerability of soil fungi.
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Journal article
Diversification of Amazonian spiny tree rats in genus Makalata (Rodentia, Echimyidae): Cryptic diversity, geographic structure and drivers of speciation.
Amazonian mammal diversity is exceptionally high, yet new taxonomic discoveries continue to be made and many questions remain for understanding its diversification through time and space. Here we investigate the diversification of spiny rats in the genus , whose species are strongly associated with seasonally flooded forests, watercourses and flooded...