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Journal article
Specimen and sample metadata standards for biodiversity genomics: a proposal from the Darwin Tree of Life project.
The vision of the is to complete reference genomes for all of the planet’s ~2M described eukaryotic species in the coming decade. To contribute to this global endeavour, the (DToL ) was launched in 2019 with the aim of generating complete genomes for the ~70k described eukaryotic species that can... -
Journal article
Sequence locally, think globally: The Darwin Tree of Life Project.
The goals of the Earth Biogenome Project—to sequence the genomes of all eukaryotic life on earth—are as daunting as they are ambitious. The Darwin Tree of Life Project was founded to demonstrate the credibility of these goals and to deliver at-scale genome sequences of unprecedented quality for a biogeographic region:...The Darwin Tree of Life Project Consortium
Genome, Assembly, Biodiversity, Sequencing, and Darwin Tree of Life Project
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Journal article
From earthquakes to island area: multi‐scale effects upon local diversity.
Tropical forests occupy small coral atolls to the vast Amazon basin. They occur across bioregions with different geological and climatic history. Differences in area and bioregional history shape species immigration, extinction and diversification. How this effects local diversity is unclear. The Indonesian archipelago hosts thousands of tree species whose coexistence... -
Journal article
Author Correction: One sixth of Amazonian tree diversity is dependent on river floodplains.
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Journal article
One sixth of Amazonian tree diversity is dependent on river floodplains.
Amazonia’s floodplain system is the largest and most biodiverse on Earth. Although forests are crucial to the ecological integrity of floodplains, our understanding of their species composition and how this may differ from surrounding forest types is still far too limited, particularly as changing inundation regimes begin to reshape floodplain... -
Journal article
Tree diversity and liana infestation predict acoustic diversity in logged tropical forests.
Chu, Zachary ; Cosset, Cindy C. P. ; Finlayson, Catherine ; Cannon, Patrick G. ; Freckleton, Robert P. …
Lianas, Logging, Tree diversity, Biodiversity, Tropical forests, Tropic, and Soundscape
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Journal article
A biogeographical appraisal of the threatened South East Africa Montane Archipelago ecoregion..
Recent biological surveys of ancient inselbergs in southern Malawi and northern Mozambique have led to the discovery and description of many species new to science, and overlapping centres of endemism across multiple taxa. Combining these endemic taxa with data on geology and climate, we propose the ‘South East Africa Montane... -
Journal article
Description of five new species of the Madagascan flagship plant genus Ravenala (Strelitziaceae).
Madagascar’s emblematic traveller’s tree is a monospecific genus within Strelitziaceae, the family of the South African bird of paradise. Until now, this endemic genus consisted of a single species: Sonn., which is grown everywhere in the tropics as an ornamental plant. The plant is immediately recognizable for its huge fan-forming... -
Journal article
The bii4africa dataset of faunal and floral population intactness estimates across Africa’s major land uses.
Sub-Saharan Africa is under-represented in global biodiversity datasets, particularly regarding the impact of land use on species’ population abundances. Drawing on recent advances in expert elicitation to ensure data consistency, 200 experts were convened using a modified-Delphi process to estimate ‘intactness scores’: the remaining proportion of an ‘intact’ reference population... -
Journal article
Undiscovered bird extinctions obscure the true magnitude of human-driven extinction waves.
Birds are among the best-studied animal groups, but their prehistoric diversity is poorly known due to low fossilization potential. Hence, while many human-driven bird extinctions (i.e., extinctions caused directly by human activities such as hunting, as well as indirectly through human-associated impacts such as land use change, fire, and the... -
Journal article
Envisaging a global infrastructure to exploit the potential of digitised collections.
Tens of millions of images from biological collections have become available online over the last two decades. In parallel, there has been a dramatic increase in the capabilities of image analysis technologies, especially those involving machine learning and computer vision. While image analysis has become mainstream in consumer applications, it... -
Journal article
A multi-taxon analysis of European Red Lists reveals major threats to biodiversity.
Biodiversity loss is a major global challenge and minimizing extinction rates is the goal of several multilateral environmental agreements. Policy decisions require comprehensive, spatially explicit information on species’ distributions and threats. We present an analysis of the conservation status of 14,669 European terrestrial, freshwater and marine species (ca. 10% of... -