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Journal article
The mirror crack'd: both pigment and structure contribute to the glossy blue appearance of the mirror orchid, Ophrys speculum.
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Journal article
The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era.
Liimatainen, K. ; Niskanen, T. ; Dima, B. ; Kytövuori, I. ; Ammirati, J. F. …
Taxonomy, Typification, Diversity, Basidiomycota, ITS, and DNA barcoding
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Journal article
Timing and tempo of evolutionary diversification in a biodiversity hotspot: Primulaceae on Indian Ocean islands.
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Journal article
A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family elanthiaceae.
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Mediterranean origin and Miocene-Holocene Old World diversification of meadow fescues and ryegrasses (Festuca subgenus Schedonorus and Lolium).
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Journal article
The effect of polyploidy and hybridization on the evolution of floral colour in Nicotiana (Solanaceae).
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Journal article
Ipomoea (Convolvulaceae) in Bolivia.
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Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa.
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Advances in genotyping microsatellite markers through sequencing and consequences of scoring methods for Ceratonia siliqua (Leguminosae)..
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Journal article
Refining the Maritime Foundations of Andean Civilization: How Plant Fiber Technology Drove Social Complexity During the Preceramic Period.
Complex society, Preceramic Period, Cotton, South coast Peru, Plant bast fibers, Peru, Maritime Foundations of Andean Civilization, Fishing nets, and Broad Spectrum Revolution
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Journal article
Trade in Zambian Edible Orchids—DNA Barcoding Reveals the Use of Unexpected Orchid Taxa for Chikanda.
In Zambia, wild edible terrestrial orchids are used to produce a local delicacy called chikanda, which has become increasingly popular throughout the country. Commercialization puts orchid populations in Zambia and neighbouring countries at risk of overharvesting. Hitherto, no study has documented which orchid species are traded on local markets, as... -
Journal article
PROTAX-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences.
Identification tool, internal transcribed spacer (ITS), Fungi, Molecular species identification, Probabilistic taxonomic assignment, Annotation, Data quality, and Environmental sequencing
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Journal article
Mixed Mating in Homostylous Species: Genetic and Experimental Evidence from an Alpine Plant with Variable Herkogamy, Primula halleri.
de Vos, Jurriaan M. ; Keller, Barbara ; Zhang, Li-Rui ; Nowak, Michael D. ; Conti, Elena
Alpine plants, Homostyly, Primula halleri, Reproduction, Flowers, Herkogamy, and Primula
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Journal article
Tracking the origin of island diversity: insights from divergence with the continental pool in monocots [PREPRINT].
At their early age, a large proportion of island pools were a partial sampling of mainland pools whatever islands are oceanic or fragments of the mainland. Through time, colonization, diversification, extinctions, have deeply transformed insular and continental communities and therefore the degree to which they share species. We studied the...Phylogenetic divergence,, Beta diversity, Monocotyledon, World island, and Isolation
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Journal article
Lessons from the past and the future of food.
Perspectives from the recent and ancient past are largely underutilized in modern sustainability or food systems studies. However, information about regional crop histories and land use systems through time can add essential value and context to debates concerning future agricultural strategies and food security. In particular, archaeological and anthropological research...Reed, Kelly ; Ryan, Philippa
Land use, Anthropology, Resilience, Food systems, Archaeology, Food security, Underutilised crops, and Sustainability
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Journal article
Rapid diversification rates in Amazonian Chrysobalanaceae inferred from plastid genome phylogenetics
We studied the evolutionary history of Chrysobalanaceae with phylogenetic analyses of complete plastid genomes from 156 species to assess the tempo of diversification in the Neotropics and help to unravel the causes of Amazonian plant diversification. These plastid genomes had a mean length of 162 204 base pairs, and the...Chave, Jerome ; Sothers, Cynthia ; Iribar, Amaia ; Suescun, Uxue ; Chase, Mark W …
tropical forest, phylogenetic inference, Amazonia, Malpighiales, and molecular dating
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Journal article
Between Metropole and Province: circulating botany in British museums, 1870–1940.
Exchange of duplicate specimens was an important element of the relationship between metropolitan and regional museums in the period 1870–1940. Evidence of transfers of botanical museum objects such as economic botany specimens is explored for the Royal Botanic Gardens, Kew, and six museums outside the capital: Cambridge University Botanical Museum,... -
Journal article
KEW GARDENS AND THE EMERGENCE OF THE SCHOOL MUSEUM IN BRITAIN, 1880–1930
The idea of the school museum as an active resource for object-based learning played an important but now neglected part in programmes of educational reform during the closing decades of the nineteenth century and the opening decades of the twentieth. In this article we focus on the role of the... -
Journal article
‘Specimens Distributed’: The circulation of objects from Kew’s Museum of Economic Botany, 1847–1914.
This paper presents research on the dispersal of objects from the Museum of Economic Botany at the Royal Botanic Gardens, Kew (rbgk) from 1847 to 1914. Established by William Hooker, the museum received thousands of objects from around the world, the display of which was designed to illustrate plants’ properties... -
Journal article
An ancient tropical origin, dispersals via land bridges and Miocene diversification explain the subcosmopolitan disjunctions of the liverwort genus Lejeunea.
Understanding the biogeographical and diversification processes explaining current diversity patterns of subcosmopolitan-distributed groups is challenging. We aimed at disentangling the historical biogeography of the subcosmopolitan liverwort genus with estimation of ancestral areas of origin and testing if sexual system and palaeotemperature variations can be factors of diversification. We assembled a...Lee, Gaik Ee ; Condamine, Fabien L. ; Bechteler, Julia ; Pérez-Escobar, Oscar Alejandro ; Scheben, Armin …
Lejeunea, Dispersals via land bridges, Tropical origin, and Miocene diversification
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Journal article
Contrasted histories of organelle and nuclear genomes underlying physiological diversification in a grass species
C4 photosynthesis evolved multiple times independently in angiosperms, but most origins are relatively old so that the early events linked to photosynthetic diversification are blurred. The grass Alloteropsis semialata is an exception, as this species encompasses C4 and non-C4 populations. Using phylogenomics and population genomics, we infer the history of...Bianconi, Matheus E. ; Dunning, Luke T. ; Curran, Emma V. ; Hidalgo, Oriane ; Powell, Robyn F. …
polyploidy, miombo woodlands, phylogenomics, C4 photosynthesis, phylogeography, and admixture
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Journal article
Contrasted histories of organelle and nuclear genomes underlying physiological diversification in a grass species
C4 photosynthesis evolved multiple times independently in angiosperms, but most origins are relatively old so that the early events linked to photosynthetic diversification are blurred. The grass Alloteropsis semialata is an exception, as this species encompasses C4 and non-C4 populations. Using phylogenomics and population genomics, we infer the history of...Bianconi, Matheus E. ; Dunning, Luke T. ; Curran, Emma V. ; Hidalgo, Oriane ; Powell, Robyn F. …
polyploidy, miombo woodlands, admixture, C₄ photosynthesis, phylogeography, and phylogenomics
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Journal article
Identifying and mapping individual plants in a highly diverse high-elevation ecosystem using UAV imagery and deep learning
The identification and counting of plant individuals is essential for environmental monitoring. UAV based imagery offer ultra-fine spatial resolution and flexibility in data acquisition, and so provide a great opportunity to enhance current plant and in-situ field surveying. However, accurate mapping of individual plants from UAV imagery remains challenging, given...Zhang, Ce ; Atkinson, Peter M. ; George, Charles ; Wen, Zhaofei ; Diazgranados, Mauricio …
Scale sequence, Multi-scale deep learning , Residual U-Net, Semantic segmentation, and Páramos
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Journal article
Challenges for Ex Situ Conservation of Wild Bananas: Seeds Collected in Papua New Guinea Have Variable Levels of Desiccation Tolerance.
Ex situ seed conservation of banana crop wild relatives (Musa spp. L.), is constrained by critical knowledge gaps in their storage and germination behaviour. Additionally, challenges in collecting seeds from wild populations impact the quality of seed collections. It is, therefore, crucial to evaluate the viability of seeds from such... -
Journal article
A haplotype-led approach to increase the precision of wheat breeding
Crop productivity must increase at unprecedented rates to meet the needs of the growing worldwide population. Exploiting natural variation for the genetic improvement of crops plays a central role in increasing productivity. Although current genomic technologies can be used for high-throughput identification of genetic variation, methods for efficiently exploiting this...Brinton, Jemima ; 10 Wheat Genome Project ; Ramirez-Gonzalez, Ricardo H. ; Simmonds, James ; Wingen, Luzie …
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Journal article
Assessing the evolution of wheat grain traits during the last 166 years using archived samples.
Ben Mariem, Sinda ; Gámez, Angie L. ; Larraya, Luis ; Fuertes-Mendizabal, Teresa ; Cañameras, Nuria …
Evolution, Natural variation in plants, Plant development , Plant stress responses, and Triticum
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Journal article
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.
Gramene (http://www.gramene.org), a knowledgebase founded on comparative functional analyses of genomic and pathway data for model plants and major crops, supports agricultural researchers worldwide. The resource is committed to open access and reproducible science based on the FAIR data principles. Since the last NAR update, we made nine releases; doubled...Tello-Ruiz, Marcela K ; Naithani, Sushma ; Gupta, Parul ; Olson, Andrew ; Wei, Sharon …
Major crops, Genomics, Model plants, Comparative genomics, Gramene, and Databases
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Journal article
Pangenome Graphs.
Low-cost whole-genome assembly has enabled the collection of haplotype-resolved pangenomes for numerous organisms. In turn, this technological change is encouraging the development of methods that can precisely address the sequence and variation described in large collections of related genomes. These approaches often use graphical models of the pangenome to support...Eizenga, Jordan M. ; Novak, Adam M. ; Sibbesen, Jonas A. ; Heumos, Simon ; Ghaffaari, Ali …
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Journal article
Plant Power: Opportunities and challenges for meeting sustainable energy needs from the plant and fungal kingdoms
Societal Impact Statement Bioenergy is a major component of the global transition to renewable energy technologies. The plant and fungal kingdoms offer great potential but remain mostly untapped. Their increased use could contribute to the renewable energy transition and addressing the United Nations Sustainable Development Goal 7 “Ensure access to...Grace, Olwen M. ; Lovett, Jon C. ; Gore, Charles J. N. ; Moat, Justin ; Ondo, Ian …
biofuel, sustainable energy, feedstock , Bioenergy , energy poverty, research effort , renewables, and biogas
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Journal article
A model-data fusion approach to analyse carbon dynamics in managed grasslands.
Grasslands are an important component of the global carbon (C) cycle, with a strong potential for C sequestration. However, an improved capacity to quantify grassland C stocks and monitor their variation in space and time, particularly in response to management, is needed in order to conserve and enhance grassland C...Myrgiotis, Vasileios ; Blei, Emanuel ; Clement, Rob ; Jones, Stephanie K. ; Keane, Ben …
Primary production, Grasslands, Carbon sequestration, United Kingdom, and Model-data fusion
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Journal article
Are Urban Communities in Successional Stasis? A Case Study on Epiphytic Lichen Communities
Urban areas may contain a wide range of potential habitats and environmental gradients and, given the many benefits to human health and well-being, there is a growing interest in maximizing their biodiversity potential. However, the ecological patterns and processes in urban areas are poorly understood. Using a widely applicable ecological...Llewellyn, Theo ; Gaya, Ester ; Murrell, David J.
empty niches, bioindicators, fungal diversity, pollution, urban ecosystems, lichenized fungi, community ecology, species co-occurrence, and epiphytes
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Journal article
Nocturnal pollination: an overlooked ecosystem service vulnerable to environmental change.
Existing assessments of the ecosystem service of pollination have been largely restricted to diurnal insects, with a particular focus on generalist foragers such as wild and honey bees. As knowledge of how these plant-pollinator systems function, their relevance to food security and biodiversity, and the fragility of these mutually beneficial...Macgregor, Callum J. ; Scott-Brown, Alison S.
Artificial light at night, Climate change, Plant-insect interactions, Biodiversity, Pollution, and Pollinators
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Journal article
Floristics of forests across low nutrient soils in Sulawesi, Indonesia.
The island of Sulawesi formed from the joining of proto‐islands roughly three million years ago. Regions of zoological endemism, corresponding to the proto‐islands, have been reported. Sulawesi's tree communities, however, remain poorly documented. In better‐studied tropical regions, soil types similar to those found in Sulawesi often have distinctive tree communities.... -
Journal article
Repeat-sequence turnover shifts fundamentally in species with large genomes.
Given the 2,400-fold range of genome sizes (0.06–148.9 Gbp (gigabase pair)) of seed plants (angiosperms and gymnosperms) with a broadly similar gene content (amounting to approximately 0.03 Gbp), the repeat-sequence content of the genome might be expected to increase with genome size, resulting in the largest genomes consisting almost entirely of repetitive...Novák, Petr ; Guignard, Maïté S. ; Neumann, Pavel ; Kelly, Laura J. ; Mlinarec, Jelena …
Species lineages, Genomes, Repeat turnover, Repeat-sequence content, and Genome size
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Journal article
On the origin of giant seeds: the macroevolution of the double coconut (Lodoicea maldivica) and its relatives (Borasseae, Arecaceae).
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Journal article
Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic Interchange.
The interchange between the previously disconnected faunas of North and South America was a massive experiment in biological invasion. A major gap in our understanding of this invasion is why there was a drastic increase in the proportion of mammals of North American origin found in South America. Four nonmutually... -
Journal article
The rise of angiosperms pushed conifers to decline during global cooling
Competition among species and entire clades can impact species diversification and extinction, which can shape macroevolutionary patterns. The fossil record shows successive biotic turnovers such that a dominant group is replaced by another. One striking example involves the decline of gymnosperms and the rapid diversification and ecological dominance of angiosperms...Condamine, Fabien L. ; Silvestro, Daniele ; Koppelhus, Eva B. ; Antonelli, Alexandre
macroevolution, competition, paleoenvironment, and gymnosperms
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Journal article
The past and future human impact on mammalian diversity
To understand the current biodiversity crisis, it is crucial to determine how humans have affected biodiversity in the past. However, the extent of human involvement in species extinctions from the Late Pleistocene onward remains contentious. Here, we apply Bayesian models to the fossil record to estimate how mammalian extinction rates...Andermann, Tobias ; Faurby, Søren ; Turvey, Samuel T. ; Antonelli, Alexandre ; Silvestro, Daniele
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Journal article
Selective extinction against redundant species buffers functional diversity
The extinction of species can destabilize ecological processes. A way to assess the ecological consequences of species loss is by examining changes in functional diversity. The preservation of functional diversity depends on the range of ecological roles performed by species, or functional richness, and the number of species per role,...Pimiento, Catalina ; Bacon, Christine D. ; Silvestro, Daniele ; Hendy, Austin ; Jaramillo, Carlos …
global change, molluscs, competition, Caribbean, extinction, and invertebrates
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Journal article
KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models. I. review and model concept
The relatively poor simulation of the below-ground processes is a severe drawback for many ecosystem models, especially when predicting responses to climate change and management. For a meaningful estimation of ecosystem production and the cycling of water, energy, nutrients and carbon, the integration of soil processes and the exchanges at...Deckmyn, Gaby ; Flores, Omar ; Mayer, Mathias ; Domene, Xavier ; Schnepf, Andrea …
Literature review, Soil Science, Ecosystem Science, and Ecology
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Journal article
Habitat specialisation controls ectomycorrhizal fungi above the treeline in the European Alps
Alpine habitats are one of the most vulnerable ecosystems to environmental change, however, little information is known about the drivers of plant–fungal interactions in these ecosystems and their resilience to climate change. We investigated the influence of the main drivers of ectomycorrhizal (EM) fungal communities along elevation and environmental gradients... -
Journal article
Genomic insights into rapid speciation within the world’s largest tree genus [PREPRINT].
Species radiations have long fascinated biologists, but the contribution of adaptation to observed diversity and speciation is still an open question. Here, we explore this question using the clove genus, Syzygium, the world’s largest genus of tree species comprising approximately 1200 species. We dissect Syzygium diversity through shotgun sequencing of...Low, Yee Wen ; Rajaraman, Sitaram ; Tomlin, Crystal ; Ahmad, Joffre Ali ; Ardi, Wisnu …
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Journal article
High evolutionary and functional distinctiveness of endemic monocots in world islands.
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Other
Indigenous food systems, biocultural heritage and the SDGs: challenges, interdisciplinary research gaps and empowering methodologies.
Indigenous Peoples’ food systems have a critical role to play in addressing the 2030 Sustainable Development Goals (SDGs) but face many challenges and have so far received little attention from researchers and policymakers. This virtual workshop, consisting of four webinars held in October 2020, brought together several Indigenous representatives, academics,...Swiderska, Krystyna ; Ryan, Philippa
Sustainable development goals, Biocultural heritage, Indigenous food systems, Empowerment, Food systems, and Sustainable agriculture
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Journal article
Is alcohol a tropical medicine? Scientific understandings of climate, stimulants and bodies in Victorian and Edwardian tropical travel.
This paper offers a new perspective on historical understandings of the relationship between alcohol, climate and the body, by studying the way that British explorers of tropical Africa drank alcohol and wrote about drink between 1850 and 1910. We demonstrate that alcohol was simultaneously classified as a medicinal, a preventative...Armston-Sheret, Edward ; Walker, Kim
Alcohol, Tropical medicines, Stimulants, Medicines, Tropical temperance, and Africa
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Journal article
New species and nomenclatural changes in Bulbophyllum (Orchidaceae) from Madagascar.
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Journal article
Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives.
Kallow, Simon ; Panis, Bart ; Vu Dang, Toan ; Vu Dang, Tuong ; Paofa, Janet …
Genetic diversity, Seed bank, Musa, Conservation strategy, Sampling, and Crop wild relatives
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Journal article
Genetic diversity and structure of Musa balbisiana populations in Vietnam and its implications for the conservation of banana crop wild relatives.
Crop wild relatives (CWR) are an indispensable source of alleles to improve desired traits in related crops. While knowledge on the genetic diversity of CWR can facilitate breeding and conservation strategies, it has poorly been assessed. Cultivated bananas are a major part of the diet and income of hundreds of...Mertens, Arne ; Bawin, Yves ; Vanden Abeele, Samuel ; Kallow, Simon ; Vu Dang, Toan …
Species diversity, Genetics, Heterozygosity, Phylogeography, Vietnam, China, Leaves, and Population genetics
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Journal article
Regulation of seed germination by diurnally alternating temperatures in disturbance-adapted banana crop wild relatives (Musa acuminata).
Seed conservation of banana crop wild relatives (Musa L. spp.) is limited because of lack of knowledge about their germination ecology. Musa acuminata Colla, the most important banana crop wild relative, is distributed in tropical and subtropical Asian and Pacific rainforests and colonizes disturbed sites. The role of temperature in... -
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Journal article
Using structural colour to track length scale of cell-wall layers in developing Pollia japonica fruits.
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Journal article
Stomatal responses to carbon dioxide and light require abscisic acid catabolism in Arabidopsis
In plants, stomata control water loss and CO2 uptake. The aperture and density of stomatal pores, and hence the exchange of gases between the plant and the atmosphere, are controlled by internal factors such as the plant hormone abscisic acid (ABA) and external signals including light and CO2. In this...Movahedi, Mahsa ; Zoulias, Nicholas ; Casson, Stuart A. ; Sun, Peng ; Liang, Yun-Kuan …
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Journal article
Ectopic expression of Triticum polonicum VRT-A2 underlies elongated glumes and grains in hexaploid wheat in a dosage-dependent manner.
Flower development is an important determinant of grain yield in crops. In wheat (Triticum spp.), natural variation for the size of spikelet and floral organs is particularly evident in Triticum turgidum ssp. polonicum (also termed Triticum polonicum), a tetraploid subspecies of wheat with long glumes, lemmas, and grains. Using map-based...Adamski, Nikolai M. ; Simmonds, James ; Brinton, Jemima F. ; Backhaus, Anna E. ; Chen, Yi …
Flower development, Ectopic expression, Triticum polonicum, and Grain yield
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