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Journal article
Living jewels: iterative evolution of iridescent blue leaves from helicoidal cell walls.
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Journal article
The genome sequence of subterranean clover, Trifolium subterraneum L. (Fabaceae).
We present a genome assembly from an individual (subterranean clover; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 483.8 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 309.28 kilobases and 144.76 kilobases in length, respectively. -
Journal article
The genome sequence of the apple, Malus domestica (Suckow) Borkh., 1803.
We present genome assemblies from four cultivars (the apple; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequences are 643–653 megabases in span. The greater part of each assembly length (99.24–99.74%) is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial and plastid genomes were also assembled and are 400 kilobases and 167 kilobases...Könyves, Kálmán ; Mian, Sahr ; Johns, Jennifer ; Ruhsam, Markus ; Leitch, Ilia J. …
Malus domestica, DNA sequence, Apples, Cultivars, and Genome sequence
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Journal article
The genome sequence of the English holly, Ilex aquifolium L. (Aquifoliaceae).
We present a genome assembly from an individual (the English holly; Eudicot; Magnoliopsida; Aquifoliales; Aquifoliaceae). The genome sequence is 800.0 megabases in span. Most of the assembly is scaffolded into 20 chromosomal pseudomolecules. The assembled mitochondrial and plastid genomes have lengths of 538.43 kilobases and 157.52 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom ; Plant Genome Sizing Collective ; Darwin Tree of Life Barcoding Collective …
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Journal article
The genome sequence of the tree of heaven, Ailanthus altissima (Mill.) Swingle, 1916.
We present a genome assembly from an individual (tree of heaven; Streptophyta; Magnoliopsida; Sapindales; Simaroubaceae). The genome sequence is 939 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies are 661.1 kilobases and 161.1 kilobases long, respectively.Schley, Rowan J. ; Leitch, Ilia J. ; Christenhusz, Maarten J. M. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom ; Darwin Tree of Life Barcoding collective …
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Journal article
The genome sequence of thale cress, Arabidopsis thaliana (Heynh., 1842).
We present a genome assembly of an specimen (thale cress; Streptophyta; Magnoliopsida; Brassicales; Brassicaceae). The genome sequence spans 138 megabases. Most of the assembly (98.76%) is scaffolded into five chromosomal pseudomolecules. The mitochondrial and plastid genomes were also assembled and are 368.8 and 154.5 kilobases in length respectively.Christenhusz, Maarten J.M. ; Twyford, Alex D. ; Hudson, Andrew ; Genome Acquisition Lab, Royal Botanic Gardens, Kew ; Genome Acquisition Lab, Royal Botanic Garden, Edinburgh …
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Journal article
The genome sequence of the common toadflax, Linaria vulgaris Mill., 1768.
We present a genome assembly from a specimen (the common toadflax; Streptophyta; Magnoliopsida; Lamiales; Plantaginaceae). The genome sequence is 760.5 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules. Two mitochondrial genomes were assembled, which were 330.8 and 144.0 kilobases long. The plastid genome was also... -
Journal article
The genome sequence of black horehound, Ballota nigra L. subsp. foetida (Lam.) Hayek (Lamiaceae).
We present a genome assembly from a specimen of (black horehound; Tracheophyta; Magnoliopsida; Lamiales; Lamiaceae). The genome sequence is 1186.8 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules. Three mitochondrial chromosomes were assembled, with lengths of 148,17, 121,67 and 125,74 kilobases. The chloroplast genome has...Christenhusz, Maarten J. M. ; Fay, Michael F. ; Leitch, Ilia J. ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Darwin Tree of Life Barcoding collective …
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Journal article
The genome sequence of the marsh skullcap, Scutellaria galericulata L.
We present a genome assembly from an individual (the marsh skullcap; Streptophyta; Magnoliopsida; Lamiales; Lamiaceae). The genome sequence is 328 megabases in span. Most of the assembly is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial and plastid genomes have also been assembled and have lengths of 326.5 kilobases and 152.6...Mian, Sahr ; Christenhusz, Maarten J. M. ; Howes, Melanie-Jayne R. ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Darwin Tree of Life Barcoding collective …
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Journal article
The genome sequence of common fleabane, Pulicaria dysenterica (L.) Bernh. (Asteraceae).
We present a genome assembly from an individual (common fleabane; Tracheophyta; Magnoliopsida; Asterales; Asteraceae). The genome sequence is 833.2 megabases in span. Most of the assembly is scaffolded into 9 chromosomal pseudomolecules. The mitochondrial and plastid genomes were assembled and have lengths of 375.47 kilobases and 150.94 kilobases respectively.Christenhusz, Maarten J. M. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Darwin Tree of Life Barcoding collective ; Plant Genome Sizing collective …
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Journal article
The genome sequence of the silverweed cinquefoil, Potentilla anserina L., 1753.
We present a genome assembly from a specimen of (the silverweed cinquefoil; Streptophyta; eudicotyledons; Rosales; Potentilleae). The haploid genome sequence is 237 megabases in span. Most of the assembly is scaffolded into seven chromosomal pseudomolecules. The mitochondrial and plastid genomes have also been assembled and are 294.6 and 155.6 kilobases...Christenhusz, Maarten J. M. ; Leitch, Ilia J ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Plant Genome Sizing collective ; Darwin Tree of Life Barcoding collective …
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Journal article
The genome sequence of soft rush, Juncus effusus (L.) Huds. (Juncaceae).
We present a genome assembly from a (soft rush; Tracheophyta; Magnoliopsida; Poales; Juncaceae). The genome sequence is 242.9 megabases in span. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial genome is 519.0 kilobases long, while the plastid genome is 175.1 kilobases long.Christenhusz, Maarten J. M. ; Leitch, Ilia J. ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Darwin Tree of Life Barcoding collective ; Plant Genome Sizing collective …
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Journal article
The genome sequence of bittersweet, Solanum dulcamara L. (Solanaceae).
We present a genome assembly from an individual (bittersweet; Eudicot; Magnoliopsida; Solanales; Solanaceae). The genome sequence is 946.3 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial and plastid genomes have also been assembled, with lengths of 459.22 kilobases and 161.98 kilobases respectively. -
Journal article
The genome sequence of the oyster mushroom, Pleurotus ostreatus ((Jacq.) P. Kummer, 1871).
We present a genome assembly from a specimen (the oyster mushroom; Basidiomycota; Agaricomycetes; Agaricales; Pleurotaceae). The genome sequence is 40.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules. Two mitochondrial genomes have been assembled, which are 73.1 and 9.3 kilobases in length. -
Journal article
Specimen and sample metadata standards for biodiversity genomics: a proposal from the Darwin Tree of Life project.
The vision of the is to complete reference genomes for all of the planet’s ~2M described eukaryotic species in the coming decade. To contribute to this global endeavour, the (DToL ) was launched in 2019 with the aim of generating complete genomes for the ~70k described eukaryotic species that can... -
Journal article
Sequence locally, think globally: The Darwin Tree of Life Project.
The goals of the Earth Biogenome Project—to sequence the genomes of all eukaryotic life on earth—are as daunting as they are ambitious. The Darwin Tree of Life Project was founded to demonstrate the credibility of these goals and to deliver at-scale genome sequences of unprecedented quality for a biogeographic region:...The Darwin Tree of Life Project Consortium
Genome, Assembly, Biodiversity, Sequencing, and Darwin Tree of Life Project
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Journal article
Eight new species of Microchirita (Gesneriaceae: Didymocarpoideae) from Thailand.
Eight new species of Microchirita (Gesneriaceae) from Thailand are described: Microchirita candida, M. chonburiensis, M. formosa, M. fuscifaucia, M. poomae, M. rayongensis, M. striata and M. suwatii. With the addition of these species, 37 species are now recorded for Thailand, considerably more than any other country.Middleton, David J. ; Tetsana, Naiyana ; Suddee, Somran ; Puglisi, Carmen
Limestone, Thailand, Microchirita, Endemic, Karst limestone, and Taxonomy
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Journal article
The genome sequence of wood avens, Geum urbanum L., 1753.
We present a genome assembly from an individual (the wood avens; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequence is 1,304.9 megabases in span. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial and plastid genomes have also been assembled and are 335.5 and 156.1 kilobases in length... -
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Book chapter
2. Tribe Ceratonieae.
Lewis, Gwilym P.
Fabaceae, Diversity, Phylogenomics, Leguminosae, Classification, Ceratonieae, Mimosoideae, and Taxonomy
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Journal article
The genome sequence of strawberry clover, Trifolium fragiferum L. (Fabaceae).
We present a genome assembly from an individual (strawberry clover; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 512.0 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 298.57 kilobases and 139.15 kilobases in length, respectively.Mian, Sahr ; Christenhusz, Maarten J. M. ; Leitch, Ilia J. ; Leitch, Andrew R. ; Fay, Michael F. …
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Journal article
The genome sequence of rosebay willowherb Chamaenerion angustifolium (L.) Scop., 1771 (syn. Epilobium angustifolium L., 1753) (Onagraceae).
We present a genome assembly from an individual (fireweed; Tracheophyta; Magnoliopsida; Myrtales; Onagraceae). The genome sequence is 655.9 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 495.18 kilobases and 160.41 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Leitch, Andrew R. ; Leitch, Ilia J. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom …
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Journal article
The genome sequence of weasel’s snout, Misopates orontium (L.) Raf. (Plantaginaceae).
We present a genome assembly from an individual (weasel’s snout; Tracheophyta; Magnoliopsida; Lamiales; Plantaginaceae). The genome sequence is 361.0 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The assembled mitochondrial and plastid genomes have lengths of 569.76 kilobases and 152.15 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom ; Plant Genome Sizing Collective ; Darwin Tree of Life Barcoding Collective …
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Book chapter
16. Entada clade.
O’Donnell, Shawn A. ; Lewis, Gwilym P.
Fabaceae, Diversity, Phylogenomics, Leguminosae, Classification, Mimosoideae, Taxonomy, and Entada
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Book chapter
10. Tribe Campsiandreae.
Lewis, Gwilym P.
Fabaceae, Diversity, Phylogenomics, Campsiandreae, Leguminosae, Classification, Mimosoideae, and Taxonomy
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Conference paper (published)
Plant pollen and spores as sources of ice nucleating particles.
Soluble molecules released from plant pollen can nucleate ice from supercooled water and are an enigmatic source of atmospherically relevant biological ice nucleators. Recently, it has been highlighted that ice nucleating particles from pollen may possess greater potential to impact cloud glaciation than previously considered, as fragments generated by pollen...Kinney, Nina L. H. ; Gibson, Matthew I. ; Ballesteros, Daniel ; Whale, Thomas F.
Spores, Pollen, Plant pollen, Plant spores, and Ice nucleating particles
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Conference paper (published)
Useful plants for reforestation activities in Kenya: linking environmental challenges to the well-being of local rural communities.
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Journal article
Wood Anatomy of Chenopodiaceae (Amaranthaceae s.l.).
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Journal article
Angraecum Darainense P. J. Cribb & Nusb. and Aeranthes Unciformis P. J. Cribb & Nusb. (Orchidaceae), Two New Species from Northern Madagascar.
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Journal article
Phytotaxa 100: The rise of a major journal in systematic and taxonomic botany.
Today, the 23rd of May, is the 305th birthday of Carl Linnaeus—father of plant taxonomy and founder of the modern scheme of binomial nomenclature. To join international celebrations of his birthday, we publish Phytotaxa 100, at the same time marking an important milestone in the history of this journal of...Zhang, Zhi-Qiang ; Esser, Hans-Joachim ; Christenhusz, Maarten J. M.
Nomenclature, Phytotaxa 100, Taxonomic botany, Phytotaxa, and New species
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Book chapter
35. Samanea clade.
Lewis, Gwilym P.
Fabaceae, Diversity, Phylogenomics, Neltuma, Leguminosae, Classification, Mimosoideae, and Taxonomy
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Journal article
Update on the systematics of Benstonea (Pandanaceae): When a visionary taxonomist foresees phylogenetic relationships.
The paleotropical monocot Pandanaceae family comprises c. 700 species distributed into five genera: Benstonea (c. 60 spp.), Freycinetia (c. 250 spp.), Martellidendron (6 spp.), Pandanus (c. 450 spp.) and Sararanga (2 spp.). Benstonea was circumscribed to include species previously placed in Pandanus section Acrostigma (one of the four sections of...Callmander, Martin W. ; Booth, Thomas J. ; Beentje, Henk ; Buerki, Sven