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Journal article
Phylogenetic study of tropical Asian Ardisia and relatives shows non-monophyly of generic and subgeneric classifications.
Julius , Avelinah ; Gutiérrez-Ortega, José Said ; Sabran, Suzana ; Tagane, Shuichiro ; Naiki, Akiyo …
Ardisia, nrITS, Ericales, Phylogeny, Myrsinoideae, Malesia, and Primulaceae
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Journal article
Una nueva variedad de Orphanodendron grandiflorum (Leguminosae: Papilionoideae) de Colombia.
Castellanos, César ; Lewis, Gwilym P. ; Ariza , William
Diversity, Orphanodendron grandiflorum, Systematic, Quercus forest, Colombia, Low tropical deciduous forest, Endemism, and Lonchocarpus
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Journal article
Historical biogeography of Tetrastigma (Vitaceae): Insights into floristic exchange patterns between Asia and Australia.
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Journal article
Willow carr fungi
Preparation of this two-part article, introducing groups of fungi found in willow carr, was prompted by three considerations. Firstly, the FM editorial panel wanted to follow up the series on alder associates (Ainsworth, 2010; Kibby, 2010; Robinson, 2010) with a corresponding series on fungi associated with willow carr to provide...Ainsworth, A. Martyn ; Kibby, Geoffery
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Journal article
Phylogeny of the tribe Marsdenieae (Apocynaceae), reinstatement of Ruehssia and the taxonomic treatment of the genus in Brazil
The Marsdenieae (Asclepiadoideae, Apocynaceae) comprise approximately 750 species and 26 accepted genera, half of which contain just one or two species. The tribe has been under-represented in phylogenetic studies to date, most of which have focussed on the ornamental paleotropical genus Hoya and related genera. American Marsdenieae are all currently...Espírito Santo, Fabio da Silva do ; Rapini, Alessandro ; Ribeiro, Patrícia Luz ; Liede-Schumann, Sigrid ; Goyder, David J. …
Plant Science and Ecology, Evolution, Behavior and Systematics
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Journal article
Calyx (con)fusion in a hyper-diverse genus: Parallel evolution of unusual flower patterns in Eugenia (Myrtaceae)
Eugenia has a pantropical distribution and comprises ca. 1000 species found mostly in the Neotropics. Recent DNA based phylogenies show that unusual flower morphology of ‘eugenioid’ collections, e.g. fused calices that open by tearing, consistently emerged within Eugenia. These results emphasize a demand to revaluate flower morphology in a phylogenetic...Giaretta, Augusto ; Vasconcelos, Thais ; Mazine, Fiorella Fernanda ; Faria, Jair Eustáquio Quintino ; Flores, Rodolfo …
Genetics, Molecular Biology, and Ecology, Evolution, Behavior and Systematics
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Journal article
Information gaps in indigenous and local knowledge for science-policy assessments
The need to understand nature’s contributions to people and across a broad spectrum of cultures and ecosystems is increasingly advocated in science assessments and policy decision-making for sustainability. However, for services such as food and medicine, gaps in existing studies on indigenous and local knowledge may preclude inclusive assessments. Here,...Cámara-Leret, Rodrigo ; Dennehy, Zoe
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Journal article
Polyploidy does not control all: Lineage‐specific average chromosome length constrains genome size evolution in ferns
Recent studies investigating the evolution of genome size diversity in ferns have shown that they have a distinctive genome profile compared with other land plants. Ferns are typically characterized by possessing medium‐sized genomes, although a few lineages have evolved very large genomes. Ferns are different from other vascular plant lineages...Liu, Hong‐Mei ; Ekrt, Libor ; Koutecky, Petr ; Pellicer, Jaume ; Hidalgo, Oriane …
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Journal article
Opportunities and challenges for an Indonesian forest monitoring network
Permanent sampling plots (PSPs) are a powerful and reliable methodology to help our understanding of the diversity and dynamics of tropical forests. Based on the current inventory of PSPs in Indonesia, there is high potential to establish a long-term collaborative forest monitoring network. Whilst there are challenges to initiating such...Brearley, Francis Q. ; Adinugroho, Wahyu C. ; Cámara-Leret, Rodrigo ; Krisnawati, Haruni ; Ledo, Alicia …
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Journal article
New circumscription, morphology and synopsis of Chamaecrista sect. Chamaecrista ser. Coriaceae (Leguminosae)
A new circumscription of Chamaecrista sect. Chamaecrista ser. Coriaceae is presented based on the results of molecular and morphological analyses. The series is monophyletic upon exclusion of three species that were included within it by Irwin and Barneby. Morphological variation within the series is discussed. Characters previously neglected, such as...Rando, Juliana Gastaldello ; Pirani, José Rubens ; Cota, Matheus Martins Teixeira ; Lewis, Gwilym Peter
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Journal article
Speciation in Howea palms occurred in sympatry, was preceded by ancestral admixture, and was associated with edaphic and phenological adaptation
Howea palms are viewed as one of the most clear-cut cases of speciation in sympatry. The sister species H. belmoreana and H. forsteriana are endemic to the oceanic Lord Howe Island, Australia, where they have overlapping distributions and are reproductively isolated mainly by flowering time differences. However, the potential role...Osborne, Owen ; Ciezarek, Adam ; Wilson, Trevor ; Crayn, Darren ; Hutton, Ian …
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Journal article
Ecological speciation in sympatric palms: 4. Demographic analyses support speciation of Howea in the face of high gene flow
The idea that populations must be geographically isolated (allopatric) to evolve into separate species has persisted for a long time. It is now clear that new species can also diverge despite ongoing genetic exchange, but few accepted cases of speciation in sympatry have held up when scrutinized using modern approaches....Papadopulos, Alexander ; Igea, Javier ; Smith, Thomas ; Hutton, Ian ; Baker, William …
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Journal article
Ecological speciation in sympatric palms: 3. Genetic map reveals genomic islands underlying species divergence in Howea
Although it is now widely accepted that speciation can occur in the face of continuous gene flow, with little or no spatial separation, the mechanisms and genomic architectures that permit such divergence are still debated. Here, we examined speciation in the face of gene flow in the Howea palms of...Papadopulos, Alexander ; Igea, Javier ; Dunning, Luke ; Osborne, Owen ; Quan, Xueping …
Genetics, Ecology, Evolution, Behavior and Systematics, and General Agricultural and Biological Sciences
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Journal article
Native Useful Plants of Chile: A Review and Use Patterns
We compiled an inventory of the uses of the native flora of Chile by extracting uses cited in the literature until 2015. The inventory reported use citations for a total of 995 species of useful vascular plants (23% of Chile’s flora). These data were used to test the hypothesis that...Díaz-Forestier, Javiera ; León-Lobos, Pedro ; Marticorena, Alicia ; Celis-Diez, Juan ; Giovannini, Peter
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Journal article
UAV survey at archaeological earthwork sites in the Brazilian state of Acre, southwestern Amazonia
Unmanned aerial vehicles (UAVs) are increasingly used for many scientific applications, including archaeological surveys. We test the suitability and practicability of UAV surveying in the tropical lowlands of Brazil and techniques for visualizing the resulting digital elevation models, specifically the Red Relief Image Map (RRIM). We present the results of...Saunaluoma, Sanna ; Anttiroiko, Niko ; Moat, Justin
Red Relief Image Map (RRIM), UAV survey, earthworks, visualization, structure‐from‐motion (SfM), and interfluvial Amazonia
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Journal article
Interaction of functional and environmental traits on seed germination of the multipurpose tree Flacourtia indica
Flacourtia indica (Salicaceae) is a multipurpose tree native to tropical regions of Africa and India, where it is mainly used for food and medicines. Its use in reforestation is limited by poor knowledge of its seed biology and germination ecology. The aim of this study was to determine how its... -
Journal article
Reconciling Darwin’s naturalization and pre‐adaptation hypotheses: An inference from phylogenetic fields of exotic plants in Japan
Aim Understanding the causes and consequences of biological invasions remains a challenge for several disciplines, including biogeography. One major issue in overcoming this challenge is disentangling the confounding mechanisms of species invasiveness and community invasibility. Here, we tackle this issue by applying a novel approach based on the phylogenetic affinities...Kusumoto, Buntarou ; Villalobos, Fabricio ; Shiono, Takayuki ; Kubota, Yasuhiro
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Journal article
Hyb-Seq for Flowering Plant Systematics
High-throughput DNA sequencing (HTS) presents great opportunities for plant systematics, yet genomic complexity needs to be reduced for HTS to be effectively applied. We highlight Hyb-Seq as a promising approach, especially in light of the recent development of probes enriching 353 low-copy nuclear genes from any flowering plant taxon. -
Journal article
Shift in flowering time allows diploid and autotetraploid Anacamptis pyramidalis (Orchidaceae) to coexist by reducing competition for pollinators
How autopolyploids establish when competing with diploid progenitors is still poorly understood. Here, we investigate the effects of morphological and phenological divergence on the reproductive success of co-occurring diploid and autotetraploid individuals of Anacamptis pyramidalis to disentangle the mechanisms allowing their c-oexistence. We estimated reproductive success in terms of absolute... -
Journal article
Enhancing identification accuracy for powdery mildews using previously underexploited DNA loci
The internal transcribed spacer (ITS) DNA marker is routinely used for fungal identification but gives a clear result for only three out of four powdery mildew samples. A search for new markers indicates that some genes offer enhanced identification in comparison with ITS. Others fail due to amplification and sequencing...Ellingham, Oliver ; David, John ; Culham, Alastair
Erysiphales, molecular markers, ITS, Mcm7, BLAST, powdery mildew, survey, citizen science, and phylogeny
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Journal article
Enhancing knowledge among smallholders on pollinators and supporting field margins for sustainable food security
Agro-ecological intensification (AEI) harnesses natural processes, such as pollination, that support sustainable crop production and can buffer against future food security risks. However, the transition from conventional agriculture, which relies on inputs that can damage natural ecosystem processes, to more sustainable food production under AEI, is knowledge-intensive. Here, we investigated...Elisante, Filemon ; Ndakidemi, Patrick A. ; Arnold, Sarah E.J. ; Belmain, Steven R. ; Gurr, Geoff M. …
ecosystem services, field margin plants, farming practices, crop production, and pollination
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Journal article
Building mountain biodiversity: Geological and evolutionary processes
Mountain regions are unusually biodiverse, with rich aggregations of small-ranged species that form centers of endemism. Mountains play an array of roles for Earth’s biodiversity and affect neighboring lowlands through biotic interchange, changes in regional climate, and nutrient runoff. The high biodiversity of certain mountains reflects the interplay of multiple...Rahbek, Carsten ; Borregaard, Michael ; Antonelli, Alexandre ; Colwell, Robert ; Holt, Ben …
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Journal article
Taxonomic Synopsis of Eriosema (Leguminosae: Papilionoideae, Phaseoleae) in Brazil
Eriosema is a pantropical genus occurring mostly in savanna vegetation and grasslands of tropical environments, with approximately 150 species and two centers of diversity, one in Africa with about 110 species, and the other in the Neotropics with about 40 species. Considering the large number of Eriosema taxa in Brazil,...Cândido, , Elisa ; de Vargas, Wanderleia ; Bezerra, Luísa ; Mansano, Vidal ; Vatanparast, Mohammad …
Cerrado, Fabaceae, Cajaninae, taxonomy, Neotropics, Rhynchosia, and Eudicots
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Journal article
‘Unknown yellow’: Pibiria, a new genus of Passifloraceae with a mixture of features found in Passifloroideae and Turneroideae
In 1993, a shrub with yellow flowers reminiscent of but obviously distinct from Turnera was found near Mabura Hill in central Guyana, which was recollected in 2000. This paper offers a morphological description including leaf and wood anatomy and pollen morphology in addition to a phylogenetic analysis based on plastid...Maas, Paul ; Baas, Pieter ; Christenhusz, Maarten ; Clarkson, James ; Koek-Noorman, Jifke …
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Journal article
A morphometric study of the restinga ecotype of Anacardium occidentale (Anacardiaceae): wild coastal cashew populations from Piauí, Northeast Brazil
The infraspecific taxonomy of wild Anacardium occidentale is little studied. We investigated whether wild populations on coastal dunes in Piauí, Brazil differed from non-wild populations. Ten populations were sampled and twenty one morphological variables were measured. Variation within and between populations was investigated with univariate and multivariate statistics. Dune populations...de Andrade, I ; de Oliveira, Nascimento ; de Sousa, M ; dos Santos, J ; Mayo, S
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Journal article
A benchmark dataset of herbarium specimen images with label data
More and more herbaria are digitising their collections. Images of specimens are made available online to facilitate access to them and allow extraction of information from them. Transcription of the data written on specimens is critical for general discoverability and enables incorporation into large aggregated research datasets. Different methods, such...Dillen, Mathias ; Groom, Quentin ; Chagnoux, Simon ; Güntsch, Anton ; Hardisty, Alex …
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Journal article
A broader circumscription of Bulbostylis including Nemum (Abildgaardieae: Cyperaceae)
Phylogenetic hypotheses and morphological characterizations of genera in the Abildgaardieae have suggested that current generic circumscriptions are not monophyletic. We here provide an updated phylogenetic hypothesis of the Abildgaardieae using nrDNA ITS sequences that continues to support the derivation of Nemum from within the Bulbostylis lineage. We make the nomenclatural...Roalson, Eric ; Prata, Ana ; Mesterhazy, Attila ; Chase, Mark ; Simpson, David …
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Journal article
A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
Premise We developed a target enrichment panel for phylogenomic studies of Dioscorea, an economically important genus with incompletely resolved relationships. Methods Our bait panel comprises 260 low- to single-copy nuclear genes targeted to work in Dioscorea, assessed here using a preliminary taxon sampling that includes both distantly and closely related...Soto Gomez, Marybel ; Pokorny, Lisa ; Kantar, Michael ; Forest, Félix ; Leitch, Ilia …
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Journal article
A multicriteria decision making approach to prioritise vascular plants for species-based conservation
There is a growing demand for species-based conservation to be strategic and deliver the greatest possible benefits for the money and resources invested. There is no global consensus on what constitutes an important species, but many biodiversity conservation initiatives prioritise the most rare, unique, vulnerable and/or useful as deserving attention....Liu, Udayangani ; Kenney, Siobhan ; Breman, Elinor ; Cossu, Tiziana
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Journal article
A new species of Argyreia (Convolvulaceae) from Myanmar
Argyreia decemloba Traiperm, Fujikawa & Staples, a new species of Convolvulaceae from Natma Taung National Park, Chin State, Myanmar, is described here with detailed illustrations and summaries for its distribution, ecology and IUCN conservation statusThis new species is a high-climbing twiner that can be distinguished by a white or pale...Traiperm, P ; Fujikawa, K ; Chitchak, N ; Srisanga, P ; Maknoi, C …
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Journal article
A new species of Condea (Lamiaceae: Ocimeae: Hyptidinae) and a new combination, from the Americas
A brief historical account of the genus Condea (Lamiaceae) is followed by a note on a new species from Brazil and a new combination in Condea from Mexico. For C. petrensis, a detail of its discovery in the outskirts of Rio de Janeiro, a description, diagnosis and illustration are provided....Harley, R
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Journal article
A prototype RFID tag for detecting bumblebee visitations within fragmented landscapes
Detecting the arbitrary movements of fast-moving insects under field conditions is notoriously difficult because existing technologies are limited by issues of size, weight, range and cost. Here, we establish proof-of-concept for a prototype long-range, passive radio frequency identification (RFID) tagging system for detecting bumblebees and similar sized insects. The prototype...Barlow, Sarah ; O’Neill, Mark ; Pavlik, Bruce
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Journal article
A new species of Oocephalus (Lamiaceae) from Goiás, Brazil
A new species, Oocephalus pubescens A.Soares & Harley, from Chapada dos Veadeiros, Goiás, Brazil, is described and illustrated. The characteristics that distinguish it from a similar taxon, Oocephalus foliosus, are listed, and comments on its distribution and an occurrence map are provided. © Trustees of the Royal Botanic Garden Edinburgh...Soares, A ; Harley, R ; Pastore, J ; Jardim, J
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Journal article
A phylogeographic study of the stoneplant Conophytum (Aizoaceae; Ruschioideae; Ruschieae) in the Bushmanland Inselberg Region (South Africa) suggests anemochory
The Bushmanland Inselberg Region (BIR) of South Africa provides an ideal system to study population interactions, as these inselbergs function as islands of Succulent Karoo surrounded by Nama Karoo vegetation. The population genetics of four Conophytum taxa endemic to the quartz-associated habitats of inselbergs in the BIR were investigated using...Powell, Robyn ; Magee, Anthony ; Forest, Felix ; Cowan, Robyn ; Boatwright, Stephen
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Journal article
A review of issues of nomenclature and taxonomy of Hypericum perforatum L. and Kew's Medicinal Plant Names Services
Objectives To review which names are used to refer to Hypericum perforatum L. in health regulation and medicinal plant references, and the potential for ambiguity or imprecision. Key findings Structured searches of Kew's Medicinal Plant Names Services Resource, supplemented with other online bibliographic resources, found that the scientific name Hypericum...Dauncey, Elizabeth ; Irving, Jason ; Allkin, Robert