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Journal article
The genome sequence of lesser trefoil or Irish shamrock, Trifolium dubium Sibth. (Fabaceae).
We present a genome assembly from an individual (lesser trefoil; Tracheophyta; Magnoliopsida; Fabales; Fabaceae) as part of a collaboration between the Darwin Tree of Life and the European Reference Genome Atlas. The genome sequence is 679.1 megabases in span. Most of the assembly is scaffolded into 15 chromosomal pseudomolecules. The...Ruhsam, Markus ; Hollingsworth, Peter M ; Mc Cartney, Ann M. ; Herron, Katie E. ; Hughes, Graham M. …
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Journal article
The genome sequence of strawberry clover, Trifolium fragiferum L. (Fabaceae).
We present a genome assembly from an individual (strawberry clover; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 512.0 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 298.57 kilobases and 139.15 kilobases in length, respectively.Mian, Sahr ; Christenhusz, Maarten J. M. ; Leitch, Ilia J. ; Leitch, Andrew R. ; Fay, Michael F. …
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Journal article
The genome sequence of rosebay willowherb Chamaenerion angustifolium (L.) Scop., 1771 (syn. Epilobium angustifolium L., 1753) (Onagraceae).
We present a genome assembly from an individual (fireweed; Tracheophyta; Magnoliopsida; Myrtales; Onagraceae). The genome sequence is 655.9 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 495.18 kilobases and 160.41 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Leitch, Andrew R. ; Leitch, Ilia J. ; Fay, Michael F. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom …
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Journal article
The genome sequence of spotted medick, Medicago arabica (L.) Huds. (Fabaceae).
We present a genome assembly from an individual (the spotted medick; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 515.5 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 324.47 kilobases and 125.07 kilobases in length, respectively.Christenhusz, Maarten J. M. ; Fay, Michael F. ; Leitch, Ilia J. ; Royal Botanic Gardens Kew Genome Acquisition Lab, United Kingdom ; Plant Genome Sizing Collective …
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Journal article
The genome sequence of subterranean clover, Trifolium subterraneum L. (Fabaceae).
We present a genome assembly from an individual (subterranean clover; Tracheophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence is 483.8 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 309.28 kilobases and 144.76 kilobases in length, respectively. -
Journal article
Plant invasion and naturalization are influenced by genome size, ecology and economic use globally.
Human factors and plant characteristics are important drivers of plant invasions, which threaten ecosystem integrity, biodiversity and human well-being. However, while previous studies often examined a limited number of factors or focused on a specific invasion stage (e.g., naturalization) for specific regions, a multi-factor and multi-stage analysis at the global...Guo, Kun ; Pyšek, Petr ; van Kleunen, Mark ; Kinlock, Nicole L. ; Lučanová, Magdalena …
Plant naturalization, Genome size, Plant invasion, Economic use, and Ecology
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Journal article
A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family Melanthiaceae.
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Journal article
The genome sequence of soft rush, Juncus effusus (L.) Huds. (Juncaceae).
We present a genome assembly from a (soft rush; Tracheophyta; Magnoliopsida; Poales; Juncaceae). The genome sequence is 242.9 megabases in span. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial genome is 519.0 kilobases long, while the plastid genome is 175.1 kilobases long.Christenhusz, Maarten J. M. ; Leitch, Ilia J. ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Darwin Tree of Life Barcoding collective ; Plant Genome Sizing collective …
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Journal article
The genome sequence of black horehound, Ballota nigra L. subsp. foetida (Lam.) Hayek (Lamiaceae).
We present a genome assembly from a specimen of (black horehound; Tracheophyta; Magnoliopsida; Lamiales; Lamiaceae). The genome sequence is 1186.8 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules. Three mitochondrial chromosomes were assembled, with lengths of 148,17, 121,67 and 125,74 kilobases. The chloroplast genome has...Christenhusz, Maarten J. M. ; Fay, Michael F. ; Leitch, Ilia J. ; Genome Acquisition Lab, Royal Botanic Gardens, Kew, United Kingdom ; Darwin Tree of Life Barcoding collective …
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Journal article
The genome sequence of the tree of heaven, Ailanthus altissima (Mill.) Swingle, 1916.
We present a genome assembly from an individual (tree of heaven; Streptophyta; Magnoliopsida; Sapindales; Simaroubaceae). The genome sequence is 939 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies are 661.1 kilobases and 161.1 kilobases long, respectively.Schley, Rowan J. ; Leitch, Ilia J. ; Christenhusz, Maarten J. M. ; Genome Acquisition Lab, Royal Botanic Gardens Kew, United Kingdom ; Darwin Tree of Life Barcoding collective …
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Book chapter
“BIFloraExplorer”: A Taxonomic, Genetic, and Ecological Data Resource for the Vascular Plants of Britain and Ireland.
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Journal article
Small genome size and variation in ploidy levels support the naturalization of vascular plants but constrain their invasive spread.
Pyšek, Petr ; Lučanová, Magdalena ; Dawson, Wayne ; Essl, Franz ; Kreft, Holger …
Naturalization, Distribution, Genome size, Plant invasions, Polyploidy, and Species traits
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Journal article
The genome sequence of the apple, Malus domestica (Suckow) Borkh., 1803.
We present genome assemblies from four cultivars (the apple; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequences are 643–653 megabases in span. The greater part of each assembly length (99.24–99.74%) is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial and plastid genomes were also assembled and are 400 kilobases and 167 kilobases...Könyves, Kálmán ; Mian, Sahr ; Johns, Jennifer ; Ruhsam, Markus ; Leitch, Ilia J. …
Malus domestica, DNA sequence, Apples, Cultivars, and Genome sequence
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Journal article
Genome resources for underutilised legume crops: genome sizes, genome skimming and marker development.
Underutilised crops suffer from under-investigation relative to more mainstream crops, but often possess improved stress tolerance and/or nutrition, making them potentially important for breeding programmes in the context of climate change and an expanding human population. Developing basic genome resources for underutilised crops may therefore catalyse analyses to facilitate their... -
Journal article
Genetic factors predict hybrid formation in the British flora.
Natural hybridization can have a profound evolutionary impact, with consequences ranging from the extinction of rare taxa to the origin of new species. Natural hybridization is particularly common in plants; however, our understanding of the general factors that promote or prevent hybridization is hampered by the highly variable outcomes in...Brown, Max R. ; Hollingsworth, Peter M. ; Forrest, Laura L. ; Hart, Michelle L. ; Leitch, Ilia J. …
Floristic, Great Britain, Genetic distance, Hybrid, Floras, and DNA barcoding
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Journal article
Phylogenomic analyses of Sapindales support new family relationships, rapid Mid-Cretaceous Hothouse diversification, and heterogeneous histories of gene duplication.
Sapindales is an angiosperm order of high economic and ecological value comprising nine families, c. 479 genera, and c. 6570 species. However, family and subfamily relationships in Sapindales remain unclear, making reconstruction of the order’s spatio-temporal and morphological evolution difficult. In this study, we used Angiosperms353 target capture data to... -
Journal article
Giant Fern Genomes Show Complex Evolution Patterns: A Comparative Analysis in Two Species of Tmesipteris (Psilotaceae).
Giant genomes are rare across the plant kingdom and their study has focused almost exclusively on angiosperms and gymnosperms. The scarce genetic data that are available for ferns, however, indicate differences in their genome organization and a lower dynamism compared to other plant groups. Tmesipteris is a small genus of... -
Journal article
Hybridisation and chloroplast capture between distinct Themeda triandra lineages in Australia.
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Journal article
Plant genome size modulates grassland community responses to multi‐nutrient additions.
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Journal article
Hybridisation and chloroplast capture between distinct Themeda triandra lineages in Australia.
Dunning, Luke T. ; Olofsson, Jill K. ; Papadopulos, Alexander S. T. ; Hibdige, Samuel G. S. ; Hidalgo, Oriane …
Ecotypes, Hybridisation, Themeda triandra, Australia, and Chloroplast capture
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Journal article
A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family elanthiaceae.
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Journal article
The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity.
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Journal article
Revised Species Delimitation in the Giant Water Lily Genus Victoria (Nymphaeaceae) Confirms a New Species and Has Implications for Its Conservation.
Reliably documenting plant diversity is necessary to protect and sustainably benefit from it. At the heart of this documentation lie species concepts and the practical methods used to delimit taxa. Here, we apply a total-evidence, iterative methodology to delimit and document species in the South American genus (Nymphaeaceae). The systematics... -
Journal article
Genome Insights into Autopolyploid Evolution: A Case Study in Senecio doronicum (Asteraceae) from the Southern Alps.
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Journal article
Polyploidy in Cupressaceae: Discovery of a new naturally occurring tetraploid, Xanthocyparis vietnamensis.
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Journal article
A taxonomic, genetic and ecological data resource for the vascular plants of Britain and Ireland.
The vascular flora of Britain and Ireland is among the most extensively studied in the world, but the current knowledge base is fragmentary, with taxonomic, ecological and genetic information scattered across different resources. Here we present the first comprehensive data repository of native and alien species optimized for fast and...Henniges, Marie C. ; Powell, Robyn F. ; Mian, Sahr ; Stace, Clive A. ; Walker, Kevin J. …
Taxonomy, Ireland, Great Britain, Plant ecology, Genetics, Biodiversity, Ecology, and Literature mining
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Journal article
Prioritising crop wild relatives to enhance agricultural resilience in sub‐Saharan Africa under climate change.
Satori, David ; Tovar, Carolina ; Faruk, Aisyah ; Hammond Hunt, Eleanor ; Muller, Gemma …
Food security , Nature-based solutions, Conservation, Seed banks, Functional traits , and Plant pre-breeding
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Journal article
Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny.
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Journal article
Genome Size Doubling Arises From the Differential Repetitive DNA Dynamics in the Genus Heloniopsis (Melanthiaceae).
Plant genomes are highly diverse in size and repetitive DNA composition. In the absence of polyploidy, the dynamics of repetitive elements, which make up the bulk of the genome in many species, are the main drivers underpinning changes in genome size and the overall evolution of the genomic landscape. The...Pellicer, Jaume ; Fernández, Pol ; Fay, Michael F. ; Michálková, Ester ; Leitch, Ilia J.
DNA repeats, C-value, Rransposable elements, Satellite DNA, Chromosome, and Heloniopsis
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Journal article
The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts.
The gymnosperm Welwitschia mirabilis belongs to the ancient, enigmatic gnetophyte lineage. It is a unique desert plant with extreme longevity and two ever-elongating leaves. We present a chromosome-level assembly of its genome (6.8 Gb/1 C) together with methylome and transcriptome data to explore its astonishing biology. We also present a refined, high-quality assembly...Wan, Tao ; Liu, Zhiming ; Leitch, Ilia J. ; Xin, Haiping ; Maggs-Kölling, Gillian …
Evolutionary ecology, Evolutionary genetics, Abiotic, and Transcriptomics
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Journal article
Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family.
Siniscalchi, Carolina M. ; Hidalgo, Oriane ; Palazzesi, Luis ; Pellicer, Jaume ; Pokorny, Lisa …
Target capture, Paralogy , Asteraceae , Angiosperms, and Phylogenomics